Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq2 547 1e-150 seq8 439 4e-118 seq4 237 2e-57 seq9 87.8 3e-12 seq5 84.2 3e-11 >seq2 Length=21549876 Score = 547 bits (606), Expect = 1e-150 Identities = 697/957 (73%), Gaps = 2/957 (0%) Strand=Plus/Plus Query 174489 ACCAACAATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCC 174548 ||| | || ||||||||| |||| |||||||||||| | ||||| ||||| || || || Sbjct 19773091 ACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACC 19773150 Query 174549 GCAACTGTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAAT 174607 |||||| | ||| || |||||||| ||| | | ||| || ||||| || || || || || Sbjct 19773151 GCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTAT 19773209 Query 174608 CCGTGAACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGT 174667 ||||| || || ||||||| | | || |||||||| || ||||||||||| || | Sbjct 19773210 TCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTAT 19773269 Query 174668 TCCTAGTTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGA 174727 ||||| ||| || ||||| | ||||| |||||||| |||||||| || | | || Sbjct 19773270 TCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGA 19773329 Query 174728 CGAATGGCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTAT 174787 || ||| | ||||| |||||||||| | ||| |||| | |||||| | ||||| | Sbjct 19773330 TGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT 19773389 Query 174788 CTACGCCTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGAT 174847 |||||||| |||||||||||||| || ||| | |||||| | |||||||| Sbjct 19773390 AGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGAT 19773449 Query 174848 CTGTGTAGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTT 174907 ||| ||||| || || || |||||||| ||| | || || ||| | | || ||| | Sbjct 19773450 TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTAT 19773509 Query 174908 CGGTCAAGGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACAT 174967 |||||||| ||||| || | ||||| || || || ||||| || ||||||| || Sbjct 19773510 TGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTAT 19773569 Query 174968 GTTGGTCTTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGC 175027 | | || ||||| ||||| ||||||||| | ||||| || || |||||||| || || || Sbjct 19773570 GATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 19773629 Query 175028 AGGTGTCTTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACT 175087 ||||| ||||| ||||| | ||| || ||||||||||| | || |||||| | Sbjct 19773630 TGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTT 19773689 Query 175088 TGTCCGTGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGA 175147 | | || || ||||||| || || || | ||||||| || || ||||| || Sbjct 19773690 GATTAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGA 19773749 Query 175148 AGAGACCTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGC 175207 |||||| ||||| || ||||| || ||||| || || || || || ||||||||||| || Sbjct 19773750 AGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGC 19773809 Query 175208 TTCATTCAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTAT 175267 | || |||||||| || || | ||||||||||| | || ||||| || || || || Sbjct 19773810 TAGTTTTAACAACTCTCGATCTTTACACTTCTTCTTGGTTGCTTGGCCTGTAGTAGGGAT 19773869 Query 175268 CTGGTTCACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCAA 175327 |||||||| || | ||| || || ||||| ||||| || || || ||||| ||||| Sbjct 19773870 TTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAA 19773929 Query 175328 CCAGTCTGTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACAG 175387 ||| ||||| | || | |||||| | || | | || | ||| ||| | | ||| | Sbjct 19773930 CCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTACTACTTTGGCTGATATCATCAACCG 19773989 Query 175388 AGCTGGTCTTGGGATGGAAGTAATGCATGAGAGAAATGCACACAACTTCCCACTAGA 175444 ||| |||||| |||||||||||||| || | ||||| ||||||||||| ||||| Sbjct 19773990 TGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGA 19774046 >seq8 Length=28014461 Score = 439 bits (486), Expect = 4e-118 Identities = 702/1008 (70%), Gaps = 0/1008 (0%) Strand=Plus/Minus Query 175853 TGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGGTCTGGATT 175912 ||||||| |||| |||||| | | || || | ||| | ||| | || |||||||| | Sbjct 17889483 TGATATTATGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGCCT 17889424 Query 175913 ACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGT 175972 | | ||| |||| ||||||| | || | || || ||| |||| || ||||||||||| Sbjct 17889423 ATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGT 17889364 Query 175973 CACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGGTGCTAACTTTCTCAC 176032 || |||||| |||||||| | || ||||||| | || ||| || || | || Sbjct 17889363 AACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTAAC 17889304 Query 176033 AGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCC 176092 || || || || || ||||| || | | | || ||| | | ||||| ||||| || Sbjct 17889303 CGCAGCAGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCC 17889244 Query 176093 TGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTGC 176152 ||| | || || || || || ||| ||| | || || || ||| | |||||||| Sbjct 17889243 GGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGC 17889184 Query 176153 TCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGACT 176212 |||||| || || || || || || || |||||| | ||||| |||||||| || | Sbjct 17889183 TCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTC 17889124 Query 176213 CATTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAG 176272 || | || || || || || ||| ||||| ||| || |||||||| ||||| Sbjct 17889123 TGTTCAATTGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTC 17889064 Query 176273 TGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGT 176332 || || || | || ||||| || ||||| ||||||||||| || ||||| || Sbjct 17889063 CGTATTCCTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGT 17889004 Query 176333 GGCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACCC 176392 ||||| || ||| ||||| | | || | || || || || || ||||| ||||||| Sbjct 17889003 AGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCC 17888944 Query 176393 CTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATGG 176452 || ||||||||||||||||| || || |||| | || || |||| || || ||||| Sbjct 17888943 ATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGG 17888884 Query 176453 CGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACAACACCTTCACTGCGTT 176512 | || || ||||| || |||| ||| || || || || |||||| || || Sbjct 17888883 GGCAACCGTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGCGCTTT 17888824 Query 176513 CGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCA 176572 | | || || | ||||| || ||||| ||||| || || || ||||| ||||| || Sbjct 17888823 TAACCCAACTCAAGCTGAAGAAACTTATTCCATGGTCACCGCTAATCGCTTTTGGTCCCA 17888764 Query 176573 AATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCC 176632 |||||| || ||||| ||| ||||| |||||| | || ||||||||| | ||||| || Sbjct 17888763 AATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACC 17888704 Query 176633 TGTCATGGGTCTTTGGGTCTCAAGTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGC 176692 |||| ||| | ||| | ||||||| | | || || ||||| || || ||||| Sbjct 17888703 GGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTGAACCTACGTGC 17888644 Query 176693 TTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCTA 176752 ||||| || || ||| || || | ||||| ||||||||||| ||||| |||||||| Sbjct 17888643 CTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTA 17888584 Query 176753 CACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCACCTGTGGATCAACC 176812 ||| || || || ||| | ||||| || | | || ||||||||| || |||||| || Sbjct 17888583 CACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCC 17888524 Query 176813 ACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGTAACGC 176860 ||||| || ||||||| || || |||||||| | || ||||| Sbjct 17888523 TCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 17888476 >seq4 Length=20076173 Score = 237 bits (262), Expect = 2e-57 Identities = 398/576 (69%), Gaps = 0/576 (0%) Strand=Plus/Plus Query 175853 TGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGGTCTGGATT 175912 ||||||| |||| |||||| | | || || | ||| | ||| | || |||||||| | Sbjct 17460155 TGATATTATGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGCCT 17460214 Query 175913 ACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGT 175972 | | ||| |||| ||||||| | || | || || ||| |||| || ||||||||||| Sbjct 17460215 ATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGT 17460274 Query 175973 CACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGGTGCTAACTTTCTCAC 176032 || |||||| |||||||| | || ||||||| | || ||| || || | || Sbjct 17460275 AACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTAAC 17460334 Query 176033 AGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCC 176092 || || || || || ||||| || | | | || ||| | | ||||| ||||| || Sbjct 17460335 CGCAGCAGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCC 17460394 Query 176093 TGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTGC 176152 ||| | || || || || || ||| ||| | || || || ||| | |||||||| Sbjct 17460395 GGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGC 17460454 Query 176153 TCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGACT 176212 |||||| || || || || || || || |||||| | ||||| |||||||| || | Sbjct 17460455 TCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTC 17460514 Query 176213 CATTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAG 176272 || | || || || || || ||| ||||| ||| || |||||||| ||||| Sbjct 17460515 TGTTCAATTGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTC 17460574 Query 176273 TGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGT 176332 || || || | || ||||| || ||||| ||||||||||| || ||||| || Sbjct 17460575 CGTATTCCTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGT 17460634 Query 176333 GGCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACCC 176392 ||||| || ||| ||||| | | || | || || || || || ||||| ||||||| Sbjct 17460635 AGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCC 17460694 Query 176393 CTTCCATATGATGGGAGTTGCTGGTATACTAGGTGG 176428 || ||||||||||||||||| || || |||| || Sbjct 17460695 ATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGG 17460730 >seq9 Length=29411429 Score = 87.8 bits (96), Expect = 3e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 175175 TGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCACGCTCACTCCA 175234 ||| || || || || || ||||||||||| ||| || |||||||| || || | || Sbjct 9641892 TGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACA 9641833 Query 175235 CTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCCAC 175294 ||||||||| || || ||||| || || || || |||||||| || | ||| || || Sbjct 9641832 CTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTAC 9641773 Query 175295 AATGGCATTCAACCTCAA 175312 ||||| ||||| || || Sbjct 9641772 TATGGCTTTCAATCTTAA 9641755 >seq5 Length=35065507 Score = 84.2 bits (92), Expect = 3e-11 Identities = 120/168 (71%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 175266 ATCTGGTTCACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTC 175325 || |||||||| || | ||| || || ||||| ||||| || ||||| ||||| ||| Sbjct 15426036 ATTTGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAATGGGTTCAATTTC 15425977 Query 175326 AACCAGTCTGTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAAC 175385 ||||| ||||| | || | |||||| | || | || || ||||| ||| | | ||| Sbjct 15425976 AACCA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAAC 15425918 Query 175386 AGAGCTGGTCTTGGGATGGAAGTAATGCATGAGAGAAATGCACACAAC 175433 | || ||||| ||||||||||| || || | ||||| ||| || Sbjct 15425917 CGTGCAAATCTTGCTATGGAAGTAATTCACGAACGTAATGCTCACCAC 15425870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729929490510560