Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq2 551 7e-152 seq8 504 9e-138 seq4 293 3e-74 seq9 96.9 4e-15 >seq2 Length=21549876 Score = 551 bits (610), Expect = 7e-152 Identities = 716/987 (73%), Gaps = 2/987 (0%) Strand=Plus/Plus Query 177849 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177908 |||||| | ||| ||||| ||| | ||||| || || |||| |||||||| || || Sbjct 19773070 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 19773129 Query 177909 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 177967 ||||| || || | ||| | |||||| ||||| || || |||||||| ||||||| || Sbjct 19773130 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCC 19773188 Query 177968 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAA 178027 || || || || || || || ||||| || || ||||||| | | || || ||||| Sbjct 19773189 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAA 19773248 Query 178028 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 178087 || ||||||||||| || |||| |||| || || || | ||||| || || || Sbjct 19773249 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 19773308 Query 178088 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 178147 |||||||| ||||| ||||||||||| | || || |||||||||| | || | || Sbjct 19773309 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 19773368 Query 178148 ATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCG 178207 | |||||| | ||||| | | || ||||| |||||||||||||| | ||| Sbjct 19773369 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCG 19773428 Query 178208 TTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATCGGC 178267 | | |||||||| || ||||| ||| ||||| || ||||| || ||||| || | || Sbjct 19773429 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 19773488 Query 178268 AGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGGCAT 178327 || ||| || | || ||| | |||||||| || ||||| | ||||| | || || Sbjct 19773489 TGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAAT 19773548 Query 178328 CTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATTCTGATGCACCC 178387 |||||||| ||||||| ||| |||| ||||| ||||| || ||||| || ||||| || Sbjct 19773549 ATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCC 19773608 Query 178388 CTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTGCAATGCACGG 178447 || |||||||| ||||| || ||||||||||| ||||| || |||||||| ||||| || Sbjct 19773609 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGG 19773668 Query 178448 TTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAACAGAATCACAGAACTATGG 178507 ||| ||||| || ||| | || | ||||| ||||||| ||||| || | || Sbjct 19773669 TTCCTTGGTAACCTCTAGTTTGATTAGGGAAACCACTGAAAACGAATCTGCTAATGAGGG 19773728 Query 178508 TTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGG 178567 ||| | || || ||||| |||||||| || || || || || || ||||| || || || Sbjct 19773729 TTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGG 19773788 Query 178568 TCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGC 178627 || || ||||||||||||||| || |||||||| || || | ||||||||| | | Sbjct 19773789 CCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGATCTTTACACTTCTTCTTGGT 19773848 Query 178628 AGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAA 178687 || ||||||||||| || || |||||||| || | || | || || ||||| || || Sbjct 19773849 TGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAA 19773908 Query 178688 CCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACAC 178747 || || |||||||| |||||||| || | | || | ||||| || || | | || Sbjct 19773909 TCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTACTAC 19773968 Query 178748 ATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGC 178807 | ||| || | |||||||||| ||| || |||||||| |||||||| || || || Sbjct 19773969 TTTGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGC 19774028 Query 178808 GCACAACTTCCCGCTTGATCTTGCAGC 178834 ||||||||||| || || || || || Sbjct 19774029 TCACAACTTCCCTCTAGACCTAGCTGC 19774055 >seq8 Length=28014461 Score = 504 bits (558), Expect = 9e-138 Identities = 716/1002 (71%), Gaps = 4/1002 (0%) Strand=Plus/Minus Query 179233 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179292 ||||||||||| | | |||| || ||||| ||||| || |||||||| || | ||| Sbjct 17889475 TGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGCCTATTGCTTT 17889416 Query 179293 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179352 |||| ||||||| | || | || |||||| |||| |||||| ||||||| || || Sbjct 17889415 TTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTT 17889356 Query 179353 GGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTTA-CGGCAGCT 179411 |||| ||||| || | || ||||||||| | || ||| || ||||||| | ||||| Sbjct 17889355 GGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA-TTTCTTAACCGCAGCA 17889297 Query 179412 GTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 179471 || || || ||||| || | | | || ||| | | ||||| ||||| || || | Sbjct 17889296 GTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCGGAAGCA 17889237 Query 179472 CAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCAC 179531 || ||| |||| || ||||| ||| | || || || |||| ||| || |||||||| Sbjct 17889236 CAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCAT 17889177 Query 179532 GGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTGG 179590 || || || || || || ||||||||| | | ||||||||||||||||| ||| | Sbjct 17889176 GGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAA 17889117 Query 179591 TATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTT 179650 | | | ||||| ||||| ||| | || ||||| || || ||||| || || || || Sbjct 17889116 TTGCGG-CCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTCCGTATT 17889058 Query 179651 CCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGC 179710 ||| || ||||| |||| || ||| |||||| || |||||| ||||| || || || Sbjct 17889057 CCTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGC 17888998 Query 179711 GATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCA 179770 ||| || | ||| | || ||| | || || || || || |||||| | ||||| || || Sbjct 17888997 GATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCA 17888938 Query 179771 TATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTAC 179830 ||||||||||||||| || || |||| | || ||||| | ||||| ||||| | || Sbjct 17888937 TATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCAAC 17888878 Query 179831 TGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTC 179890 || || || || | | ||| || || || ||||||||||| || ||| | | Sbjct 17888877 CGTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCC 17888818 Query 179891 GACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTT 179950 || || | ||||| |||||||| |||||||| || || ||||| ||||| || ||||| Sbjct 17888817 AACTCAAGCTGAAGAAACTTATTCCATGGTCACCGCTAATCGCTTTTGGTCCCAAATCTT 17888758 Query 179951 CGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTAT 180010 ||| |||| ||||| || || || ||| | ||||| || ||| | ||||| || || | Sbjct 17888757 TGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCGGTCAC 17888698 Query 180011 GGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGA 180070 ||| |||||| |||||||| | | || || ||||| ||||| ||||| || || Sbjct 17888697 CGGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTGAACCTACGTGCCTATGA 17888638 Query 180071 TTTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACACCAA 180130 ||||| ||||| ||| | ||||| |||||||| || |||||||| ||||||||||| Sbjct 17888637 CTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAA 17888578 Query 180131 GAACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCACCAGTTGATCAACCACATGA 180190 || |||||| | || || || | ||||| ||| ||||| | ||||| || ||||| Sbjct 17888577 AAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGA 17888518 Query 180191 GTCATTCGTATTCCCAGAAGAAGTTCTGCCAAGAGGTAATGC 180232 | ||||||| || || ||||| ||| | || || || Sbjct 17888517 AAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 17888476 >seq4 Length=20076173 Score = 293 bits (324), Expect = 3e-74 Identities = 410/570 (72%), Gaps = 4/570 (1%) Strand=Plus/Plus Query 179233 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179292 ||||||||||| | | |||| || ||||| ||||| || |||||||| || | ||| Sbjct 17460163 TGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGCCTATTGCTTT 17460222 Query 179293 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179352 |||| ||||||| | || | || |||||| |||| |||||| ||||||| || || Sbjct 17460223 TTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTT 17460282 Query 179353 GGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTT-ACGGCAGCT 179411 |||| ||||| || | || ||||||||| | || ||| || |||||| || ||||| Sbjct 17460283 GGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA-TTTCTTAACCGCAGCA 17460341 Query 179412 GTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 179471 || || || ||||| || | | | || ||| | | ||||| ||||| || || | Sbjct 17460342 GTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCGGAAGCA 17460401 Query 179472 CAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCAC 179531 || ||| |||| || ||||| ||| | || || || |||| ||| || |||||||| Sbjct 17460402 CAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCAT 17460461 Query 179532 GGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTC-GCCTGATTGG 179590 || || || || || || ||||||||| | | |||||||||||||||| | ||| || Sbjct 17460462 GGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTG-TTCA 17460520 Query 179591 TATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTT 179650 | | ||||| ||||| ||| | || ||||| || || ||||| || || || || Sbjct 17460521 ATTGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTCCGTATT 17460580 Query 179651 CCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGC 179710 ||| || ||||| |||| || ||| |||||| || |||||| ||||| || || || Sbjct 17460581 CCTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGC 17460640 Query 179711 GATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCA 179770 ||| || | ||| | || ||| | || || || || || |||||| | ||||| || || Sbjct 17460641 GATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCA 17460700 Query 179771 TATGATGGGAGTTGCTGGTATACTAGGAGG 179800 ||||||||||||||| || || |||| || Sbjct 17460701 TATGATGGGAGTTGCCGGAGTATTAGGCGG 17460730 >seq9 Length=29411429 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 178556 TGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCA 178615 ||| || || || || || ||||||||||||||| || |||||||| ||||| | || Sbjct 9641892 TGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACA 9641833 Query 178616 CTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCAC 178675 ||||||| | || || ||||||||||| || || |||||||| || | || | || || Sbjct 9641832 CTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTAC 9641773 Query 178676 CATGGCATTTAACCTCAA 178693 ||||| || || || || Sbjct 9641772 TATGGCTTTCAATCTTAA 9641755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 606009509098560