Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq2 571 7e-158 seq8 567 9e-157 seq4 325 5e-84 seq9 100 3e-16 seq5 84.2 3e-11 >seq2 Length=21549876 Score = 571 bits (632), Expect = 7e-158 Identities = 723/989 (73%), Gaps = 4/989 (0%) Strand=Plus/Plus Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920 |||||| | ||| |||| |||| | || ||| | || | || ||||||||||| || Sbjct 19773070 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 19773129 Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 178979 ||||| ||||| || | | |||||| ||||| || || | || ||| | || || || Sbjct 19773130 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCC 19773188 Query 178980 TCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 179039 ||| || |||||||| || || ||||| || || ||||||| | | || |||||||| Sbjct 19773189 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAA 19773248 Query 179040 CATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCAT 179099 || ||||||||||| || | || | ||| || || || | ||||| ||||| || Sbjct 19773249 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 19773308 Query 179100 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGT 179159 |||||||| ||||| | ||||||||| | || || |||||||||| | || | || Sbjct 19773309 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 19773368 Query 179160 CTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCG 179219 | |||||| | | || | | |||||||| |||||||||||||| || ||| Sbjct 19773369 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCG 19773428 Query 179220 TCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGC 179279 ||| ||||||||||| ||||| ||||||||| || || || || || ||||| | ||| Sbjct 19773429 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 19773488 Query 179280 AGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTAT 179339 || ||| | | || ||| | |||||||| ||||||||||| ||||||| | || || Sbjct 19773489 TGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAAT 19773548 Query 179340 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 179399 ||||||||||| |||| ||| |||||||||| ||||| || |||||||||||||| || Sbjct 19773549 ATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCC 19773608 Query 179400 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 179459 || || ||| | ||||| ||||| |||||||| || || || ||| ||||||||| || Sbjct 19773609 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGG 19773668 Query 179460 AAGTCTCGTTACTTCCTCGCTTG-TTCGTGAAACAACTGAGACAGAGTCACAGAACTATG 179518 | || || | || | ||| || | ||||| ||||| | || || || | | Sbjct 19773669 TTCCTTGGTAACCT-CTAGTTTGATTAGGGAAACCACTGAAAACGAATCTGCTAATGAGG 19773727 Query 179519 GTTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCG 179578 |||| | || || ||||| |||||||| ||||| || || || || ||||| || || | Sbjct 19773728 GTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTG 19773787 Query 179579 GTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCACTTCTTCCTTG 179638 | || || |||||||||||||| ||||||||||| || ||||| ||||||||| | | Sbjct 19773788 GCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGATCTTTACACTTCTTCTTGG 19773847 Query 179639 CTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAACCATGGCGTTCA 179698 ||| ||||| || || || || |||||||||||| | || | || ||||| |||| Sbjct 19773848 TTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 19773907 Query 179699 ACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTAACA 179758 | || ||||| ||||| |||||||| || | |||| | ||||| || || ||| | Sbjct 19773908 ATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTACTA 19773967 Query 179759 CATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCATGAGCGTAACG 179818 | | ||| || | | |||||||| | | ||||||||||| ||||| || ||||| | Sbjct 19773968 CTTTGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATG 19774027 Query 179819 CACACAACTTCCCACTCGACCTTGCTGCT 179847 | ||||||||||| || ||||| |||||| Sbjct 19774028 CTCACAACTTCCCTCTAGACCTAGCTGCT 19774056 >seq8 Length=28014461 Score = 567 bits (628), Expect = 9e-157 Identities = 728/1001 (73%), Gaps = 2/1001 (0%) Strand=Plus/Minus Query 180031 TGGACGACTGGCTTAAACGCGACCGCTTTGTATTTGTGGGCTGGTCTGGACTACTACTTC 180090 ||||||||||| | | | ||||| ||||| ||||| || |||||||| ||| | ||| Sbjct 17889475 TGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGCCTATTGCTTT 17889416 Query 180091 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTT 180150 |||| ||||||| | || | || |||||| |||| || ||| ||||||| || || Sbjct 17889415 TTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTT 17889356 Query 180151 GGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTA-CGGCAGCT 180209 |||| ||||| || | || ||||||| | |||||| || ||||||| | ||||| Sbjct 17889355 GGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA-TTTCTTAACCGCAGCA 17889297 Query 180210 GTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 180269 || || || ||||| | | | | || ||| | | ||||| ||||| || || | Sbjct 17889296 GTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCGGAAGCA 17889237 Query 180270 CAGGGGAATTTCCAACGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCAC 180329 || ||| |||| || ||||| ||| | || || || |||| ||| || |||||||| Sbjct 17889236 CAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCAT 17889177 Query 180330 GGTGCCTTCGCCCTAATTGGATTTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGT 180389 || || || || ||||| || || ||| |||| || |||||||| || || | || Sbjct 17889176 GGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAA 17889117 Query 180390 ATCCGTCCTTACAATGCTATTGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTT 180449 | || ||||| ||||| ||| |||||||||| || |||||||| ||||| |||||| Sbjct 17889116 TTGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTCCGTATTC 17889057 Query 180450 CTCATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCA 180509 || || || |||||||| || ||| ||||||||||||| || |||||| |||||||| Sbjct 17889056 CTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCG 17888997 Query 180510 ATCTTTAGATTCCTACTCTTTCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCAT 180569 || ||| ||||| | ||||| | || || || || || ||||| | ||||| || ||| Sbjct 17888996 ATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCAT 17888937 Query 180570 ATGATGGGAGTTGCTGGTATACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACT 180629 |||||||||||||| || || |||| | || |||||| || || ||||| | ||| Sbjct 17888936 ATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCAACC 17888877 Query 180630 GTGGAGAACACACTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCA 180689 ||||| ||||| || | ||| || || || ||||| ||||| || ||| | || Sbjct 17888876 GTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCCA 17888817 Query 180690 ACGCAAGAGGAGGAAACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTC 180749 || |||| || |||||||| || |||||||| || || ||||| ||||| || ||||| Sbjct 17888816 ACTCAAGCTGAAGAAACTTATTCCATGGTCACCGCTAATCGCTTTTGGTCCCAAATCTTT 17888757 Query 180750 GGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATG 180809 ||| |||| ||||| || || || ||| | ||||| || ||| | ||||| || || | Sbjct 17888756 GGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCGGTCACC 17888697 Query 180810 GGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGAT 180869 ||| |||||| |||||||| | | || || ||||| ||||| ||||| || || Sbjct 17888696 GGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTGAACCTACGTGCCTATGAC 17888637 Query 180870 TTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAG 180929 ||||| || || ||| | ||||| ||||||||||| || ||||| ||||||||||| Sbjct 17888636 TTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAA 17888577 Query 180930 AACATCCTATTGAATGAAGGACTACGTGCATGGTTGGCACCTGCCGATCAACCACACGAA 180989 || || || || || || || | ||||| ||| ||||| || ||||| || || ||| Sbjct 17888576 AATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAA 17888517 Query 180990 AACTTCATCTTCCCTGAAGAAGTTCTACCAAGAGGTAACGC 181030 || | || |||||||| || ||||||||| | || ||||| Sbjct 17888516 AATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 17888476 >seq4 Length=20076173 Score = 325 bits (360), Expect = 5e-84 Identities = 415/569 (73%), Gaps = 2/569 (0%) Strand=Plus/Plus Query 180031 TGGACGACTGGCTTAAACGCGACCGCTTTGTATTTGTGGGCTGGTCTGGACTACTACTTC 180090 ||||||||||| | | | ||||| ||||| ||||| || |||||||| ||| | ||| Sbjct 17460163 TGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGCCTATTGCTTT 17460222 Query 180091 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTT 180150 |||| ||||||| | || | || |||||| |||| || ||| ||||||| || || Sbjct 17460223 TTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTT 17460282 Query 180151 GGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTT-ACGGCAGCT 180209 |||| ||||| || | || ||||||| | |||||| || |||||| || ||||| Sbjct 17460283 GGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA-TTTCTTAACCGCAGCA 17460341 Query 180210 GTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 180269 || || || ||||| | | | | || ||| | | ||||| ||||| || || | Sbjct 17460342 GTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCGGAAGCA 17460401 Query 180270 CAGGGGAATTTCCAACGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCAC 180329 || ||| |||| || ||||| ||| | || || || |||| ||| || |||||||| Sbjct 17460402 CAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCAT 17460461 Query 180330 GGTGCCTTCGCCCTAATTGGATTTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGT 180389 || || || || ||||| || || ||| |||| || |||||||| || || | || Sbjct 17460462 GGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAA 17460521 Query 180390 ATCCGTCCTTACAATGCTATTGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTT 180449 | || ||||| ||||| ||| |||||||||| || |||||||| ||||| |||||| Sbjct 17460522 TTGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTCCGTATTC 17460581 Query 180450 CTCATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCA 180509 || || || |||||||| || ||| ||||||||||||| || |||||| |||||||| Sbjct 17460582 CTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCG 17460641 Query 180510 ATCTTTAGATTCCTACTCTTTCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCAT 180569 || ||| ||||| | ||||| | || || || || || ||||| | ||||| || ||| Sbjct 17460642 ATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCAT 17460701 Query 180570 ATGATGGGAGTTGCTGGTATACTAGGTGG 180598 |||||||||||||| || || |||| || Sbjct 17460702 ATGATGGGAGTTGCCGGAGTATTAGGCGG 17460730 >seq9 Length=29411429 Score = 100 bits (110), Expect = 3e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 179568 TGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCA 179627 ||| || || || || || |||||||||||||| ||||||||||| || ||||| || Sbjct 9641892 TGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACA 9641833 Query 179628 CTTCTTCCTTGCTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAAC 179687 ||||||| | ||||| ||||| || || || || |||||||||||| | || | || Sbjct 9641832 CTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTAC 9641773 Query 179688 CATGGCGTTCAACCTCAA 179705 ||||| ||||| || || Sbjct 9641772 TATGGCTTTCAATCTTAA 9641755 >seq5 Length=35065507 Score = 84.2 bits (92), Expect = 3e-11 Identities = 120/168 (71%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 179659 ATCTGGTTCACTGCTCTTGGCGTGTCAACCATGGCGTTCAACCTCAACGGTTTCAACTTC 179718 || |||||||||||| | || | || ||||| ||||| || || || ||||| ||| Sbjct 15426036 ATTTGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAATGGGTTCAATTTC 15425977 Query 179719 AACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTAACACATGGGCGGACGTATTGAAC 179778 ||||| || | |||| | ||||| || || |||| || ||||| || | | ||| Sbjct 15425976 AACCA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAAC 15425918 Query 179779 CGTGCAGGTTTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAAC 179826 |||||| | | | ||||||||| || || || ||||| || ||| || Sbjct 15425917 CGTGCAAATCTTGCTATGGAAGTAATTCACGAACGTAATGCTCACCAC 15425870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610329508450560