Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1 113 6e-20 seq5 96.9 5e-15 seq9 84.2 3e-11 >seq1 Length=42845077 Score = 113 bits (124), Expect = 6e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | || | |||||| | ||| | || | ||||| |||| ||| || Sbjct 6095921 TCCACCTTGATCAACATAACGGGCAGTATCATTGAAAACACGTAGCATAGGAACAATCCC 6095862 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| || | |||||||||||| ||||| || || | || |||||||| || || Sbjct 6095861 ATTGGAGGTTCCATTTGTTCCACGGATATAGCTCCCAGTAGCTCGAATATTGTGAACTGA 6095802 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 || ||| |||||||| || ||| || | |||||| ||||| || ||||| || Sbjct 6095801 TACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAAAGTATCATAGAT 6095742 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| ||||| |||||| ||||| | ||| |||||||| Sbjct 6095741 TCCCTCAATGCTGTCATCTTTCATGCAGATAAGGAAACAGCT 6095700 >seq5 Length=35065507 Score = 96.9 bits (106), Expect = 5e-15 Identities = 159/227 (70%), Gaps = 8/227 (4%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | || | ||||| | ||| | || | |||||| |||| ||| || Sbjct 33030629 TCCGCCTTGATCAACATAACGTGCAGTATCATTGAAAACACGCAGCATGGGAACAATCCC 33030570 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| | ||||||||||| ||| ||||| || | || | |||||| ||| || Sbjct 33030569 ATTAGATGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCTCTAATATTGTGAATTGA 33030510 Query 69870 TAGACCTATTCCTCCTGC-CATTTTAGAGATTA---GAGCACAACGTTTCAATGTGTCAT 69925 ||||| ||||| || || ||||| | ||| |||||| | | || |||| Sbjct 33030509 GAGACCAATTCCACCAGCACATTT----GCTTATGGTAGCACATTCTGAGAGAGTATCAT 33030454 Query 69926 ATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 | || ||||| |||||||||||| ||||| | || || |||||| Sbjct 33030453 AAATTCCCTCAATGCTATCATCTTTCATGCAGATGAGGAAGCAGCTA 33030407 >seq9 Length=29411429 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || |||||||| || | || | ||||| || || ||||| Sbjct 8530715 GCAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAG 8530774 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734 || ||||| || || ||||| |||||||| || ||||| ||| || || || || |||| Sbjct 8530775 GCCCGGCATGAGCCCCCGCTTCTTGAGCCAGAAGATGGC-GCAGAAGGAGCCCGAGAAGA 8530833 Query 39735 AGATGCCTTCTAC 39747 |||| || || || Sbjct 8530834 AGATCCCCTCGAC 8530846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908696963680