Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq11 104 2e-17 seq8 100 2e-16 seq7 96.9 3e-15 seq5 96.9 3e-15 >seq11 Length=26703665 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || ||||| |||||||| | | |||| | || |||||||| || || Sbjct 4117616 GTCGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGTCCTTCCTCGAGCTGCTTGCCA 4117675 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| ||||| || ||||| || | |||||| ||||| |||||| ||| Sbjct 4117676 GCGAAGATGAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTATCCTGGATCTTCGCCTTC 4117735 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | || || || || || || || ||||| ||||| ||| Sbjct 4117736 ACATTGTCGATTGTGTCGGATGACTCCACCTCAAGGGTGATGGACTTGCCGGTCAGGGTT 4117795 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 4117796 TTCACAAAGATCTGCAT 4117812 >seq8 Length=28014461 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| | ||||| | ||||||||||| || || Sbjct 22386874 GTGGATTCCTTCTGGATGTTGTAGTCAGCAAGCGTGCGCCCATCTTCGAGCTGCTTGCCA 22386815 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | ||||| || || ||||||| || Sbjct 22386814 GCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTT 22386755 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | || || | || ||||| || || ||||| | ||||| || ||||| Sbjct 22386754 ACATTGTCAATGGTATCCGAGGACTCAACCTCAAGGGTTATGGTCTTGCCAGTAAGAGTC 22386695 Query 27231 TTCACAAAGATTTGCATAGCTGCTAAAAATTTAT 27264 ||||||||||| ||||| |||| || ||| ||| Sbjct 22386694 TTCACAAAGATCTGCAT--CTGC-AAGAATGTAT 22386664 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 |||| || || || || || || || || ||||| || ||| | | ||| | || || Sbjct 24290980 ACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAATCTGCTAAGGC-GCGGCCATCCTC 24290922 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 |||||| || || || | || || ||||| |||||||| || | ||||| || || Sbjct 24290921 GAGCTGCTTGCCAGCCAAGATCAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTG 24290862 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||| ||| | | | || | ||||||| | ||||| || || || || | ||| Sbjct 24290861 AATCTTTGCTTTTACGTTGTCAATTGTGTCTGACGACTCAACCTCCAGGGTAATGGTTTT 24290802 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| |||| || || |||||||||||||| Sbjct 24290801 GCCGGTCAATGTCTTGACAAAGATTTGCAT 24290772 >seq7 Length=28646061 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| || | |||| | || || ||||| || ||| Sbjct 26601160 GTGGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGGCCATCCTCCAGCTGCTTGCCG 26601101 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | |||||| || || ||||||| ||| Sbjct 26601100 GCGAAGATGAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTC 26601041 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | || || || || || || || | ||||| ||||| || Sbjct 26601040 ACATTGTCGATCGTGTCCGAGGACTCGACCTCAAGCGTGATGGTCTTGCCGGTCAGGGTC 26600981 Query 27231 TTCACAAAGATTTGCATA 27248 || || ||||| |||||| Sbjct 26600980 TTGACGAAGATCTGCATA 26600963 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| || | |||| | || || ||||| || || Sbjct 26600255 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCA 26600196 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | ||||| || || ||||||| || Sbjct 26600195 GCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 26600136 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | || ||||| || || || || | ||||| || || || Sbjct 26600135 ACATTGTCAATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 26600076 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 26600075 TTCACAAAGATCTGCAT 26600059 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || | ||||| || || || || || || || || || ||||| Sbjct 24916346 CCTCCACGAAGGCGGAGGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTATAGTCAGCA 24916287 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| |||| || ||||| || || ||| | ||||| ||||| || || || || Sbjct 24916286 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGA 24916227 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| || || ||||||| |||| | || | ||||| | || ||||| Sbjct 24916226 ATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATCGTGTCAGAGGACTCAACC 24916167 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | || || | ||||| || || || ||||||||||| |||||| Sbjct 24916166 TCCAAGGTGATCGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCATA 24916119 >seq5 Length=35065507 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || || || ||||||||| | | |||| | || |||||||| || ||| Sbjct 3012151 GTAGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCG 3012210 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || || || || | ||||| || || ||||||| || Sbjct 3012211 GCGAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 3012270 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | ||||| || || || || | ||||| || || || Sbjct 3012271 ACGTTGTCGATGGTGTCCGAGCTCTCAACCTCCAGGGTGATGGTCTTGCCTGTGAGGGTC 3012330 Query 27231 TTCACAAAGATTTGCATA 27248 || |||||||| |||||| Sbjct 3012331 TTGACAAAGATCTGCATA 3012348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934337853344