Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq9 89.7 2e-12 >seq9 Length=29411429 Score = 89.7 bits (98), Expect = 2e-12 Identities = 125/174 (72%), Gaps = 1/174 (1%) Strand=Plus/Plus Query 443698 GCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCT 443757 |||||| |||||| || ||||| || || ||||| || | || || ||| | Sbjct 1286695 GCTTCGCCGAGCGGCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCT-CGGGTTCA 1286753 Query 443758 TTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAAC 443817 || | ||||||||||| | || ||||| ||||| |||| || || ||||| ||| Sbjct 1286754 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCGGGCCTCACCTTCTCCAAC 1286813 Query 443818 GAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTAC 443871 || || ||| || ||||||||| | || |||||||||||||| || |||||| Sbjct 1286814 GAGCTCATCTCCCGCGACGAGGGTCTCCACTGCGACTTCGCCTGCCTCCTCTAC 1286867 Score = 89.7 bits (98), Expect = 2e-12 Identities = 125/174 (72%), Gaps = 1/174 (1%) Strand=Plus/Minus Query 443698 GCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCT 443757 |||||| |||||| || ||||| || || ||||| || | || || ||| || Sbjct 8530878 GCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCT 8530819 Query 443758 TTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAAC 443817 | || ||||||||||| | || ||||| || || |||| || || ||||| ||| Sbjct 8530818 TCTGCG-CCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAAC 8530760 Query 443818 GAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTAC 443871 || || ||| || |||||||| |||| |||||||||||||| || |||||| Sbjct 8530759 GAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTCTAC 8530706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588335755793340