Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq9 123 3e-23 >seq9 Length=29411429 Score = 123 bits (136), Expect = 3e-23 Identities = 307/454 (68%), Gaps = 14/454 (3%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| ||||| |||||||| |||||||||||||| || | ||| ||| ||||| Sbjct 1287142 TAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATC 1287083 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGG-TGGCACCCCAACTTGTTTGAGGAGACG 122489 |||| || || || |||| | || | |||||| | | | ||| || || Sbjct 1287082 CAGTCGAACGGGTTGGCGACGTTGTACATCTTCTTGCACCCGAGCGCCAT-GAGCAGCCG 1287024 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAG-GTTAC 122548 || | || |||| ||||||| | ||| ||| |||||| |||| ||| | || Sbjct 1287023 GTCGGCGACGAACTCGATGTACTGGCTCATGAGCTCGCCGTTCATCCCGACGAGCGCGAC 1286964 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 ||||| ||||| ||| |||| | |||| || || || || || ||||| | | Sbjct 1286963 G-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCGTCGGCGACGATCTCCT 1286905 Query 122609 GGATAGTTTCGGTAGTGGGTCTATTACGCAAAG----TCTT-GAAGAGCTCCACGGCAAA 122663 ||| | | | || | || | ||| || || | || ||| || ||| || Sbjct 1286904 GGAC-GCGTGACTCGTCGAGCT-TGCCGCGGAGGAGGTCGTAGAGGAGG--CA-GGCGAA 1286850 Query 122664 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCAT 122723 || |||||||||||| || ||||| || || || || |||||| || || ||||| Sbjct 1286849 GTCGCAGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCAT 1286790 Query 122724 GAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTC 122783 ||| || |||||||| | ||| | || ||||||||||| || ||||||||||| ||||| Sbjct 1286789 GAGTCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAATGAACCCGAGAAGAAGATCCCCTC 1286730 Query 122784 CACACACGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 || || || || || | || || ||||||||| Sbjct 1286729 GACGCAGGCGAAGGCGACGAGCCGCTCGGCGAAG 1286696 Score = 114 bits (126), Expect = 2e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || ||||| || ||||| || || || || |||||| || || |||||||| || Sbjct 8530730 GTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCC 8530789 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 ||||||||| | ||| | || |||||||| || || ||||||||||| ||||| || || Sbjct 8530790 CCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCCTCGACGCA 8530849 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 || || || | ||||| ||||||||| Sbjct 8530850 GGCGAAGGCGACGAGGCGCTCGGCGAAG 8530877 Score = 114 bits (126), Expect = 2e-20 Identities = 198/287 (69%), Gaps = 12/287 (4%) Strand=Plus/Minus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 |||||||| || || | || | || ||| |||||||| | | || ||||| ||| Sbjct 28672327 TCAAAACGTCCAGGTCTGAGTAAAGCAGAATCCAGGATATCAGCCCTGTTGGTGGCAGCA 28672268 Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572 ||||| | || ||||| | ||||| ||||||||||| || || || ||||| | Sbjct 28672267 ATAACAATGATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAGCAACTGATTCAAA 28672208 Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCA-CTG-----CGTTGCTTGCCC 11626 || || || || ||||||||| | ||||||| | ||| | |||| | || Sbjct 28672207 GTCTGCTCCCTTTCATCATTTCC------ACCACCAATACCTGTCCCTCTTTGCCTCCCA 28672154 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || |||||||| ||||||| || || || || || ||| || || | | ||| Sbjct 28672153 ACAGCATCAATTTCATCAACAAATACTATGCAAGGAGCATTCTCCTTTGCCTTCTTGAAG 28672094 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 ||||| ||||||| |||||| || || ||||||||||||||||| Sbjct 28672093 AGATCACGAACCCGGGAGGCACCAACTCCGACAAACATCTCCACAAA 28672047 Score = 109 bits (120), Expect = 7e-19 Identities = 216/318 (68%), Gaps = 4/318 (1%) Strand=Plus/Plus Query 11538 CAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTG 11597 |||| ||||||||||| || | | || ||||| || || || |||||||||||| | Sbjct 28828358 CAAATCCATCCATCTCAGTCAAGAGCTGGTTAATGGTCTGCTCCCTCTCATCATTTCCC- 28828416 Query 11598 GCATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAAT 11655 | | | | ||||||| || ||| | || || |||||||| |||||||||||||| || Sbjct 28828417 -CCTCCGAGCCCAGCACCACGCTGCCTCCCGACGGCATCAATTTCATCAATGAAGACGAT 28828475 Query 11656 ACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 || || || | ||| | || || || || | ||||| |||||| ||||| Sbjct 28828476 GCAAGGGGCCTTGGCCTTGGCCTTCTCGAACAGGTCCCTGACCCTGGAGGCACCGACACC 28828535 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACC 11775 || |||| ||| || || | | || | ||| || |||||| || | || || Sbjct 28828536 GACGAACAGCTCAACGAACTCGGACGCGGCGCAGGAGAAGAATGGCACTCCGGCCTCCCC 28828595 Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCC 11835 |||| ||| || || || || ||||| || || || ||| || |||| ||| || Sbjct 28828596 GGCGACGGCACGCGCCAGCAGTGTCTTCCCGGTTCCGGGCGGGCCGACGAGCAGGCATCC 28828655 Query 11836 TCGGGGGATCTTGGCACC 11853 |||||||||||| || Sbjct 28828656 CTTGGGGATCTTGGCCCC 28828673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031905795200