Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq9 150 2e-31 >seq9 Length=29411429 Score = 150 bits (166), Expect = 2e-31 Identities = 122/148 (82%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| ||| |||| || || || || ||||| ||||||||||| ||||| || Sbjct 1286696 CTTCGCCGAGCGGCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGTTCATT 1286755 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 1286756 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCGGGCCTCACCTTCTCCAACGA 1286815 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| ||||| || |||||||| |||||| Sbjct 1286816 GCTCATCTCCCGCGACGAGGGTCTCCAC 1286843 Score = 145 bits (160), Expect = 9e-30 Identities = 121/148 (82%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| ||| |||| || || || || ||||| ||||||||||| || ||||| Sbjct 8530877 CTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCTT 8530818 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 8530817 CTGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 8530758 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| ||||| || |||||||| || ||| Sbjct 8530757 GCTCATCTCCCGCGACGAGGGCCTGCAC 8530730 Score = 116 bits (128), Expect = 4e-21 Identities = 275/408 (67%), Gaps = 8/408 (2%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 ||||| || | || || ||||| ||||| | || || | |||| | || |||||| Sbjct 28828270 CGATCGAACCTCCCAGGGCGAAGAAGCGCCGCGTCGAGCACATCAGGCCTGTTTGTCGCG 28828329 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 |||| |||| | ||| | | | |||| ||||||||||| ||||| || |||||| Sbjct 28828330 GCGAGCACAATGACACCGCTATTGCCAGCAAATCCATCCATCTCAGTCAAGAGCTGGTTA 28828389 Query 9644 ATAGTTTGTTCCCGTTCATCA-TTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCAC 9702 || || || |||| |||||| ||| | | | | ||||||| || ||| | || || Sbjct 28828390 ATGGTCTGCTCCCTCTCATCATTTCCCCCTCCGAGC-CCAGCACCACGCTGCCTCCCGAC 28828448 Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT--TCAAAG 9760 ||||||||| |||||||||||||||||||| || | || || | || || || Sbjct 28828449 GGCATCAATTTCATCAATGAAGACGATGCAAGG--GGCCTTGGCCTTGGCCTTCTCGAAC 28828506 Query 9761 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9820 || |||| || | ||| || ||||| || |||| ||| || || | | |||| Sbjct 28828507 AGGTCCCTGACCCTGGAGGCACCGACACCGACGAACAGCTCAACGAACTCGGACGCGGCG 28828566 Query 9821 CATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9880 || || ||| || || | || || || | ||| || || || || ||||| || Sbjct 28828567 CAGGAGAAGAATGGCACTCCGGCCTCCCCGGCGACGGCACGCGCCAGCAGTGTCTTCCCG 28828626 Query 9881 GTACCTGGCTTACCCGCGAGGAGGGCACCTCGT-GGAATCTTGGCGCC 9927 || || ||| || |||| | |||| | | | || |||||||| || Sbjct 28828627 GTTCCGGGCGGGCCGACGAGCA-GGCATCCCTTGGGGATCTTGGCCCC 28828673 Score = 102 bits (112), Expect = 1e-16 Identities = 231/342 (68%), Gaps = 18/342 (5%) Strand=Plus/Minus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 ||| ||||||||| | | || || || || || |||| || || || | ||||| Sbjct 28672298 ATCCAGGATATCAGCCCTGTTGGTGGCAGCAATAACAATGATTCCAGTGTTCCCCTCAAA 28672239 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 |||||||||||| |||| | || || | ||| || |||| ||||||||| | Sbjct 28672238 ACCATCCATCTCAGTCAGCAACTGATTCAAAGTCTGCTCCCTTTCATCATTTCC------ 28672185 Query 9676 ACCACCAGCA-CTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGAT 9729 ||||||| | ||| | |||| | || || |||||||| ||||||| || || || Sbjct 28672184 ACCACCAATACCTGTCCCTCTTTGCCTCCCAACAGCATCAATTTCATCAACAAATACTAT 28672125 Query 9730 GCATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACA 9787 ||| || ||| || || |||| |||||||| || || || ||| || || Sbjct 28672124 GCAAGGAGCATTCTCCTTTGC--CTTCTTGAAGAGATCACGAACCCGGGAGGCACCAACT 28672067 Query 9788 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 9846 || ||||||||||||||||| | | | | | || | || || || ||| || ||| Sbjct 28672066 CCGACAAACATCTCCACAAACTCAGATCCTG-ATATCGAGAAAAACGGCACACCAGCTTC 28672008 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 || ||||| || ||| || | ||||||||| || || || Sbjct 28672007 CCCTGCAATAGCCTTGGCAAGCAAAGTCTTACCAGTTCCAGG 28671966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260712510880