Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq9 190 2e-43 >seq9 Length=29411429 Score = 190 bits (210), Expect = 2e-43 Identities = 572/863 (66%), Gaps = 29/863 (3%) Strand=Plus/Plus Query 59572 GGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGG 59631 |||||||| | | |||| | || ||||| ||| | | || |||||| | | |||| Sbjct 1286293 GGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGTTCTGGACGGCGGAGG 1286352 Query 59632 AGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAA---GCTCAATTACGACGAGCAGC 59688 || | |||||| ||| ||| | | |||||| ||| |||||||| | Sbjct 1286353 AGGTGGACCTCTCCGCCGACGCGCGCCACTGGGACGCCGCGCTGTCGCCCGACGAGCGCC 1286412 Query 59689 ATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATA 59748 | ||| || || || |||||||||||||| ||||| || ||| | || || Sbjct 1286413 ACTTCGTCTCCCACGTGCTCGCCTTCTTCGCGGCCTCCGATGGCATCGTGCTCGAGAACC 1286472 Query 59749 TAGAC---ATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGT 59805 | | | | | | | ||| || || ||| | |||||||| || | ||||||| | Sbjct 1286473 TCGCCTCCAGGTTCATGTCC---GACGTGCAGGTCGCCGAGGCTCGCGCCTTCTACGGCT 1286529 Query 59806 ATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTG 59864 ||| ||| || |||| |||||||| |||| ||||||||| || |||| | || Sbjct 1286530 TCCAGATCGC-CATCGAGAACATCCACTCGGAGATGTACTCGCTTCTGCTCGAGACGTAC 1286588 Query 59865 GTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTT 59924 || || | ||||||| | || ||||| ||||| || || |||||| || Sbjct 1286589 ATCCGCGACGACGTCGAGAAGGACCGCCTCTTCCGCGCCATCGACACCGTCCCCGCCGTG 1286648 Query 59925 AAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTG-GAGCATCATTTGCACAAC 59982 | || || || |||||||||| ||||| || | | |||| || || | | Sbjct 1286649 CGCCGCAAGGCCGACTGGGCCATGCGATGGATCGACGGCGGCGAGCGC--TTCGCCGAGC 1286706 Query 59983 GTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTT 60042 | ||| | || || || ||||| || || ||||||||||| || || ||||| || || | Sbjct 1286707 GGCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGTTCATTCTGCGCCATCT 1286766 Query 60043 TCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCC 60102 |||||||||| ||||| || |||||||||||||| | |||||||||||||| || |||| Sbjct 1286767 TCTGGCTCAAGAAGCGCGGACTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCC 1286826 Query 60103 GGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACCT-ATTGGAAAA 60160 | |||||||| ||||| || || || || | ||||| | ||| || || Sbjct 1286827 GCGACGAGGGTCTCCACTGCGACTTCGC-CTGCCTCCTCTACGACCTCCTCCGCGGCAAG 1286885 Query 60161 AT-GCCCTTCCAAGGATATTCACAAGATTGT-TCAGTGGGCTTGTGAAGTGGAGAGCGAG 60218 | | | || | | || |||| || | | | | || || | ||||| ||| Sbjct 1286886 CTCGACGAGTCACG--CGTCCAGGAGATCGTCGCCGACGCCGTG-GACATCGAGAGGGAG 1286942 Query 60219 TTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAG 60278 ||| || || ||||| || | ||| | || ||| ||| | |||| ||| Sbjct 1286943 TTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGGATGAACGGCGAGCTCATGAGCCAG 1287002 Query 60279 TACATTCAGTTTGTCGCGGACCG---CCTCATGGCCCAGTTTGGAGAAGGACCAATTTAC 60335 ||||| |||| ||||| ||||| |||||||| | | || | | || || ||| Sbjct 1287003 TACATCGAGTTCGTCGCCGACCGGCTGCTCATGGCGC--TCGGGTGCAAGA-AGATGTAC 1287059 Query 60336 GGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTC 60395 ||| ||||| ||||||||||||||| |||||| || | || |||||||||||| Sbjct 1287060 AACGTCGCCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTC 1287119 Query 60396 TTTGAGAAGCGGGTCGGGGATTA 60418 || |||||||| ||||| || || Sbjct 1287120 TTCGAGAAGCGCGTCGGCGACTA 1287142 Score = 187 bits (206), Expect = 3e-42 Identities = 587/892 (66%), Gaps = 33/892 (4%) Strand=Plus/Minus Query 59545 CCGCGCGTTTCACAACCTTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAG 59604 ||| ||| ||| | | || || || |||||||| | | |||| | || ||||| | Sbjct 8531307 CCGAGCGATTCTCGATGTTCCCGATCAGGTACCCGCAGATCTGGGAGTTCTACAAGAAGG 8531248 Query 59605 CGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGG 59664 || | | || |||||| | | |||||| | |||||| ||| ||| | | |||| Sbjct 8531247 CGGTGGCGTCGTTCTGGACGGCGGAGGAGGTGGACCTCTCCGCCGACGCGCGCCACTGGG 8531188 Query 59665 ACAA---GCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGG 59721 || ||| |||||||| || |||||| || || ||||||||||| | Sbjct 8531187 ACGCCGCGCTGTCCCCCGACGAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCG 8531128 Query 59722 CGAGTGATGGAATTGTGATGGAAAATATAGAC---ATGAACTTTTCCAAGGATGTCCAGA 59778 | || || || ||| | || || | | | | | | | ||| || || ||| Sbjct 8531127 CCTCCGACGGCATCGTGCTCGAGAACCTCGCCTCCAGGTTCATGTCC---GACGTGCAGG 8531071 Query 59779 TTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAG 59837 | |||||||| || | ||||||| | ||| ||| || |||| |||||||||||| Sbjct 8531070 TCGCCGAGGCGCGCGCCTTCTACGGATTCCAGATCGC-CATCGAGAACATCCACTCCGAG 8531012 Query 59838 ACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTC 59897 | ||||||||| || |||| | | || || | ||||||| | |||||| Sbjct 8531011 ATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGGCGCCGAGAAGGACCGGCTGTTC 8530952 Query 59898 CGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT- 59956 || ||||| || || ||| || || | || || || |||||||||| ||||| Sbjct 8530951 CGCGCCATCGACACCGTCCCGGCCGTGCGCCGCAAGGCCGACTGGGCCATGCGCTGGATC 8530892 Query 59957 GAGTCCTG-GAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCT 60015 || | | |||| || || | || ||| | || || || ||||| || || |||| Sbjct 8530891 GACGGCGGCGAGCGC--TTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGGATCT 8530834 Query 60016 TCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCC 60075 ||||||| ||||| ||||| || || ||||||||||| ||||| || ||||||||||||| Sbjct 8530833 TCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCGGGCC 8530774 Query 60076 TGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGA 60135 | | |||||||||||||| || ||||| ||||||||||| || || || || || Sbjct 8530773 TCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGC-CTGC 8530715 Query 60136 C-GCTCTATTCACACCTATTGGAAAAATGCCCTTCCA--AGGATATTCACAAGATTGT-T 60191 | ||||| | ||| | || || | | | | | | | |||| || Sbjct 8530714 CTCCTCTACGACCTCCTCCGCGGCAA--GCTCGACGAGGCGCGCGTCCGCGAGATCGTCG 8530657 Query 60192 CAGTGGGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATA 60251 | | | | | || | ||||| |||||| || || ||||| || | ||| | Sbjct 8530656 CCGACGCCGT-CGACATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTC 8530598 Query 60252 GGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCG---CCTCATG 60308 || ||| ||| | |||| |||||||| |||| ||||| ||||| ||||||| Sbjct 8530597 GGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCATG 8530538 Query 60309 --GCCCAGTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGA 60366 || | | | ||||| || ||| ||| ||||| ||||||||||||||| Sbjct 8530537 GCGCTCGGCTGCAAGAAG-----ATGTACAACGTCGCCAACCCCTTCGACTGGATGGAGC 8530483 Query 60367 CCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 ||| || || | || |||||||||||||| |||||||| ||||| || || Sbjct 8530482 TCATATCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 8530431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524717721280