Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq11 122 8e-23 seq5 118 9e-22 seq8 109 5e-19 seq7 100 2e-16 seq9 98.7 9e-16 seq12 89.7 4e-13 >seq11 Length=26703665 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| |||||||||||||| || || ||||| ||||| | ||| Sbjct 4117812 ATGCAGATCTTTGTGAAAACCCTGACCGGCAAGTCCATCACCCTTGAGGTGGAGTCATCC 4117753 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || || || || || || || || || Sbjct 4117752 GACACAATCGACAATGTGAAGGCGAAGATCCAGGATAAGGAGGGTATTCCCCCGGACCAG 4117693 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCG-ACCGTTTCCGATTACAA 27166 ||||| | || | ||| ||||| || | || || || || ||| || | || ||||| Sbjct 4117692 CAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGA-AGGACGCACCCTTGCTGACTACAA 4117634 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 |||||| |||||||||||| | ||| | || | ||| | || |||||| Sbjct 4117633 CATTCAGAAGGAGTCGACCCTCCATCTTGTCCTCCGTCTCCGTGGTGGC 4117585 >seq5 Length=35065507 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||||||||| |||| || || || ||||| | || Sbjct 3013285 ATGCAGATCTTTGTGAAGACATTGACCGGCAAGACTATCACCCTCGAGGTGGAGTCCTCT 3013226 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || ||||| || || ||||| || || || || Sbjct 3013225 GACACCATCGATAATGTCAAGGCTAAGATCCAAGATAAGGAGGGCATCCCCCCGGACCAG 3013166 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || |||| || | |||| || | || |||||| Sbjct 3013165 CAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGCAGGACCCTTGCTGACTACAAC 3013106 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || | || | || | || |||||||| Sbjct 3013105 ATCCAGAAGGAGTCGACCCTTCACCTTGTCCTCCGCCTCCGTGGTGGCAT 3013056 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || |||||||||||| | ||||| ||||| || || | || Sbjct 30648633 CATGCAGATTTTTGTCAAGACCCTGACCGGCAAGACCATTACGCTTGAGGTTGAGTCTTC 30648574 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 | |||| || | || || || || || ||||| || || || || || || || Sbjct 30648573 TCATACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCA 30648514 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| || || | ||||||||| || | || || | ||| | | |||||||| Sbjct 30648513 GCAGCGCTTGATCTTCGCCGGCAAGCAGCTTGAGGATGGACGCACCCTGGCAGATTACAA 30648454 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||| || |||||||| ||||| || |||| | || | || |||||| Sbjct 30648453 CATCCAGAAGGAGTCCACCTTGCACCTGGTGCTCCGCCTCCGTGGTGGC 30648405 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || |||| || ||| | || ||||| || || || |||| Sbjct 30648861 CATGCAGATCTTTGTGAAGACCTTGACAGGAAAGACCATCACTCTCGAGGTCGAGTCGTC 30648802 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| || | || || || || || ||||| || || || || || || || Sbjct 30648801 GGACACGATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCTCCTGACCA 30648742 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | |||||||| || | || |||||| |||| | | |||||||| Sbjct 30648741 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGACAGTCGGACCCTGGCTGATTACAA 30648682 Query 27167 CATTCAAAAGGAGTCGAC 27184 |||||| || ||||| || Sbjct 30648681 CATTCAGAAAGAGTCCAC 30648664 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | || || || || || || | || Sbjct 30649088 ATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATCACCCTCGAGGTTGAGTCCTCT 30649029 Query 27048 GACTCGATTGA-GATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||| |||| | || || ||||||||||| || ||||| ||||| || || Sbjct 30649028 GATACAATTGATGATG-TGAAGGCCAAGATTCAAGACAAGGAGGGCATTCCACCTGACCA 30648970 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || ||| | || | || ||||| ||| | || || | ||| | | |||||||| Sbjct 30648969 GCAACGTCTCATCTTTGCTGGCAAGCAACTAGAGGATGGCCGCACCCTCGCGGATTACAA 30648910 Query 27167 CATTCAAAAGGAGTCGACC 27185 ||| || |||||||| ||| Sbjct 30648909 CATCCAGAAGGAGTCCACC 30648891 >seq8 Length=28014461 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || |||||||||| | ||||| || || || || |||| Sbjct 24290772 ATGCAAATCTTTGTCAAGACATTGACCGGCAAAACCATTACCCTGGAGGTTGAGTCGTCA 24290831 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| ||| ||||| ||||| || ||||| || || ||||| Sbjct 24290832 GACACAATTGACAACGTAAAAGCAAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCAG 24290891 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | || ||||| || | || || | || | | ||||||||| Sbjct 24290892 CAGCGACTGATCTTGGCTGGCAAGCAGCTCGAGGATGGCCGCGCCTTAGCAGATTACAAC 24290951 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || |||||||| ||||| || |||| | ||| | || |||||| Sbjct 24290952 ATCCAGAAGGAGTCCACCTTGCACCTGGTGCTCCGTCTCCGTGGTGGC 24290999 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| || |||||| | |||||||| || || || ||| Sbjct 22387590 ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATTACTCTGGAGGTTGAGAGCTCC 22387649 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || || || ||||| ||||| || || || || || Sbjct 22387650 GATACCATCGACAATGTGAAGGCTAAGATCCAGGACAAGGAAGGTATTCCCCCAGACCAG 22387709 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || ||||||| | ||| | |||| |||||| Sbjct 22387710 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACCCTCGCCGACTACAAC 22387769 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||| ||| | || |||| | || | ||||||| Sbjct 22387770 ATTCAGAAGGAGTCTACCCTCCACCTGGTGCTCCGCCTCAGGGGTGG 22387816 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| || |||||| ||||||| || || || || || Sbjct 22387362 ATGCAGATTTTCGTCAAGACTCTCACTGGCAAGACTATTACCCTGGAGGTTGAGAGCTCA 22387421 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || || || ||||| || || || || Sbjct 22387422 GACACCATCGACAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCCCCGGACCAG 22387481 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||| || || || |||| || | ||| || |||| |||||| Sbjct 22387482 CAGAGACTCATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTTGCCGACTACAAC 22387541 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| ||| |||| ||||| | || | ||||||| || Sbjct 22387542 ATTCAGAAGGAGTCTACCCTACACTTGGTGCTCCGCCTCAGGGGTGGTAT 22387591 >seq7 Length=28646061 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || ||||| || || | || Sbjct 26600964 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACGCTTGAGGTCGAGTCCTCG 26601023 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || || || || || ||||| || || || || || || || Sbjct 26601024 GACACGATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 26601083 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || |||| || | ||| | | || |||||| Sbjct 26601084 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCTTGGCTGACTACAAC 26601143 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 || || |||||||| ||| | || ||||| Sbjct 26601144 ATCCAGAAGGAGTCCACCCTTCACCTGGTT 26601173 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | ||||| ||||| || || ||||| Sbjct 26601192 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATTACCCTTGAGGTTGAGTCGTCC 26601251 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || || ||||| || ||||| || || || || Sbjct 26601252 GACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 26601311 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || || | || || | ||| || | ||||||||| Sbjct 26601312 CAGCGTCTGATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTTGCGGATTACAAC 26601371 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || |||||||| || | || |||| | || | || |||||| Sbjct 26601372 ATCCAGAAGGAGTCCACACTCCACCTGGTGCTCCGCCTCCGTGGTGGC 26601419 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||||||| | || || || || || || |||| Sbjct 24916348 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTTGAGTCGTCT 24916407 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || || || || || ||||| || || || ||||| || || Sbjct 24916408 GACACGATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCACCAGACCAG 24916467 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| ||||| || | || || || ||| || | ||||||||| Sbjct 24916468 CAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGCACCCTTGCAGATTACAAC 24916527 Query 27168 ATTCAAAAGGAGTCGACC 27185 || || |||||||| ||| Sbjct 24916528 ATCCAGAAGGAGTCCACC 24916545 >seq9 Length=29411429 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| | || || || || ||||| | || Sbjct 7709173 ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACGATCACGCTGGAGGTGGAGTCCTCG 7709232 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || ||||| || || || || ||||| || Sbjct 7709233 GACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCGCCCGACCAG 7709292 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || |||| ||| | ||| | |||| |||||| Sbjct 7709293 CAGCGGCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGCACCCTCGCCGACTACAAC 7709352 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || || |||||||||||| | || |||| Sbjct 7709353 ATCCAGAAGGAGTCGACCCTCCACCTGGT 7709381 >seq12 Length=20407407 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 27078 CAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTG 27137 || ||||| ||||| || || || |||||||||||||| |||| ||||||||| || || Sbjct 12157565 CAGGACAAGGAAGGGATCCCTCCAGATCAACAGCGTTTGATATTCGCCGGCAAGCAGCTG 12157624 Query 27138 GAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||||| | || | |||| ||||||||||| |||||||| || | || ||||| Sbjct 12157625 GAAGATGGGCGCACACTGGCCGACTACAACATTCAGAAGGAGTCAACTCTTCACTTGGT 12157683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918334762240