Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1 104 2e-17 seq9 102 7e-17 seq7 102 7e-17 seq5 100 2e-16 seq8 98.7 9e-16 seq11 84.2 2e-11 >seq1 Length=42845077 Score = 104 bits (114), Expect = 2e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 39052 TTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAA 39111 |||| ||| || | | ||| | ||||| || ||||| ||| || || || || || Sbjct 24053840 TTCAGGCCGCCGCGGAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAG 24053781 Query 39112 TCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCG 39171 ||||| || || || |||| || ||||| ||||| || || || || ||||||||||| Sbjct 24053780 TCGGCCAGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCC 24053721 Query 39172 GTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGAC 39231 | || | | ||| |||||| | ||| |||| || | ||| ||||| | Sbjct 24053720 GGCGGGATCCCCTCCTTGTCCTGCACCTTCGCCTTGACGTTCTGGATCGTGTCGCTGCTC 24053661 Query 39232 TCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 ||||| |||| |||||| | || |||||||| || || || ||||| ||||||| Sbjct 24053660 TCCACCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCT 24053606 >seq9 Length=29411429 Score = 102 bits (112), Expect = 7e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || || ||| || || || || || ||||| || || || | Sbjct 7709388 GCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCC 7709329 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| ||||| || || || || ||||||||||||| || | | ||| || Sbjct 7709328 GTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCGGGCGGGATCCCCTCCTT 7709269 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| ||| || | ||| | | | || || |||||||| |||| ||||| Sbjct 7709268 GTCCTGGATCTTCGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGA 7709210 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | | || |||||||| || || || ||||| |||||||| Sbjct 7709209 TCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 7709170 >seq7 Length=28646061 Score = 102 bits (112), Expect = 7e-17 Identities = 155/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || ||| ||| || || || || ||||| ||||| || || | Sbjct 26601407 GCGGAGCACCAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAATCCGCAAGGGTGCGGCC 26601348 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || |||||||| || || ||||| || |||||||||||||| | ||| | || ||| || Sbjct 26601347 ATCCTCAAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTT 26601288 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| ||| || | ||| | | | || ||| |||||| || || | || | Sbjct 26601287 GTCCTGGATCTTCGCCTTCA-CGTTGTCAATAGTGTCGGACGACTCAACCTCAAGGGTAA 26601229 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 | | || || ||||| || || || ||||| |||||| Sbjct 26601228 TGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATC 26601191 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || || |||||||| || || |||| || ||||| Sbjct 26600938 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCCAGCTGC 26600879 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| ||||| || |||||||||||||| | ||| | || ||| |||||| ||| || Sbjct 26600878 TTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTG 26600819 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 |||| | | | || || |||||| || || | ||||| | || || ||| Sbjct 26600818 GCCTTGACATTGTCAATGGTGTCAGACGACTCGACCTCAAGGGTGATGGTCTTGCCAGTC 26600759 Query 39262 AGCGTTTTAACAAAGATTTGCAT 39284 | || || || ||||| ||||| Sbjct 26600758 AAGGTCTTGACGAAGATCTGCAT 26600736 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || | | | ||| | || || ||| ||| || || || || || || Sbjct 26600289 CATGCCTCCCCTGAGCCTGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 26600230 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 ||| || || || | || |||||||| ||||| || || || |||||||||||||| | Sbjct 26600229 GGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGG 26600170 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 ||| | || ||| |||||| ||| || |||| | | | || || ||||| Sbjct 26600169 GGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCCGAGGACTC 26600110 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || || | ||||| | || || || || || || |||||||| ||||||| Sbjct 26600109 AACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATCT 26600057 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| | | ||| | ||||| || | ||| ||| || || || ||||| || ||| Sbjct 24916346 CCTCCACGAAGGCGGAGGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTATAGTCAGCA 24916287 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || |||| |||||||| ||||| || || || || ||||||||||| | || Sbjct 24916286 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGA 24916227 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||| |||||| ||| || || | | | | ||| || ||||| || Sbjct 24916226 ATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATCGTGTCAGAGGACTCAACC 24916167 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| | || || || || || || |||||||| ||||| Sbjct 24916166 TCCAAGGTGATCGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCAT 24916120 >seq5 Length=35065507 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAA-CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAAT 39112 || |||||| || | || ||| ||| | || || ||| |||||| || || || |||| Sbjct 30648630 CATGCCTCCCCTCA-GCCTAAGCACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAAT 30648688 Query 39113 CGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGG 39172 | || || || || ||| |||||||| ||||| ||||| || |||||||||||||| | Sbjct 30648689 CAGCCAGGGTCCGACTGTCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCAG 30648748 Query 39173 TGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACT 39232 || | | ||| |||||| ||| ||| || | | | | ||| || ||||| Sbjct 30648749 GAGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTGTCCGACGACT 30648808 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || | ||||| | ||||| |||| || || |||||||| ||||| Sbjct 30648809 CGACCTCGAGAGTGATGGTCTTTCCTGTCAAGGTCTTCACAAAGATCTGCAT 30648860 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || | ||| ||| || || || || ||||| || || || ||| | Sbjct 30648417 GCGGAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAATCTGCCAGGGTGCGTCC 30648476 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || |||||||| ||||| || || || | ||||||||||| | ||| | | ||| || Sbjct 30648477 ATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATTCCCTCCTT 30648536 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| ||| || | ||| | | | ||||| ||||| || || | ||| | Sbjct 30648537 GTCCTGGATCTTCGCCTTCA-CGTTGTCGATCGTATGAGAAGACTCAACCTCAAGCGTAA 30648595 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | | || || ||||| || || ||||| || ||||| Sbjct 30648596 TGGTCTTGCCGGTCAGGGTCTTGACAAAAATCTGCAT 30648632 >seq8 Length=28014461 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| |||| ||| | || | || || ||| ||| || || || || || || ||| Sbjct 22387132 CCTCCCCTTAGGCGGAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCA 22387073 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || | | || || ||||| ||||| ||||| || |||||||||||||| | ||| Sbjct 22387072 AGGGTCCTACCATCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGA 22387013 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCAC 39236 | | ||| |||||| ||| || || | | ||| | | | ||||| ||||| || Sbjct 22387012 ATCCCCTCCTTGTCCTGGATCTT-TGCCTTAACGTTGTCAATAGTATCAGAAGACTCAAC 22386954 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | |||||| | || || |||| || || |||||||||||||| Sbjct 22386953 CTCAAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 22386906 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||| | || || ||| ||| || || || || || ||||| || || || | Sbjct 3565259 GCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCC 3565200 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| || || || || ||||||||||| | ||| | | || || Sbjct 3565199 ATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATCCCTTCCTT 3565140 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| || || | ||| | | | || || |||||||| |||| ||||| Sbjct 3565139 GTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGA 3565081 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | | || |||||||| || || || ||||| |||||||| Sbjct 3565080 TGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 3565041 >seq11 Length=26703665 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || || ||||| || ||| | || || ||||| ||||| || || Sbjct 4117621 CTCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGTCCTTCCTCGAGCTGCTTGCCAGCGAA 4117680 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || ||||||||||| | ||| | | ||| || ||| ||| ||| || | | Sbjct 4117681 GATGAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTATCCTGGATCTTCGCCTTCACATT 4117740 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | || ||| |||||||| || | ||||| || || ||||| ||||| || Sbjct 4117741 GTCGATTGTGTCGGATGACTCCACCTCAAGGGTGATGGACTTGCCGGTCAGGGTTTTCAC 4117800 Query 39273 AAAGATTTGCATCT 39286 |||||| ||||||| Sbjct 4117801 AAAGATCTGCATCT 4117814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429545537178956