Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq8 98.7 7e-16 seq5 98.7 7e-16 seq12 93.3 3e-14 seq7 93.3 3e-14 >seq8 Length=28014461 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || ||||| || || || || || || || ||||| ||| | Sbjct 24289903 ATGCAGATCTTTGTGAAGACACTCACTGGCAATACCATAACCCTAGAGGTTGAGTCCTCT 24289962 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | | ||| | || | || | || ||||| || ||| | || || || || Sbjct 24289963 GACACAACTCACAATGTCAAGGCCAAGA-TTCAGGACAAGGAGGGTATTCCACCTGACCA 24290021 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||| ||||| ||||| || |||| |||||| | | |||||||| Sbjct 24290022 GCAGCGCCTCATCTTTGCGGGCAAGCAACTTGAGGACGGACGCACCCTCGCAGATTACAA 24290081 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| | ||||||||||| Sbjct 24290082 CATTCGGAAAGAGTCCAC 24290099 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || || | || || ||||| || || || || ||||| || | Sbjct 24290771 AATGCAAATCTTTGTCAAGACATTGACCGGCAAAACCATTACCCTGGAGGTTGAGTCGTC 24290830 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| | ||||| ||| ||| ||||| || || | || || ||||| Sbjct 24290831 AGACACAATTGACAACGTAAAAGCAAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCA 24290890 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || || || ||||| || || || || | ||| | |||| |||||||| Sbjct 24290891 GCAGCGACTGATCTTGGCTGGCAAGCAGCTCGAGGATGGCCGCGCCTTAGCAGATTACAA 24290950 Query 23790 CATACAAAAAGAGTCCACATTACA 23813 ||| || || |||||||| || || Sbjct 24290951 CATCCAGAAGGAGTCCACCTTGCA 24290974 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || ||||| || || || || || || || || ||||| || | Sbjct 22387133 AATGCAGATCTTCGTGAAGACCCTTACTGGCAAGACCATTACGCTTGAGGTTGAGTCATC 22387192 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || | | || || || ||||| || || | || |||||||| Sbjct 22387193 AGACACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCA 22387252 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||||||||| || ||||| || | | || | | || ||||| Sbjct 22387253 GCAGCGTCTTATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACCCTCGCTGACTACAA 22387312 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 22387313 CATCCAGAAGGAGTCCAC 22387330 >seq5 Length=35065507 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||| | || ||||| || ||||||||||| || || || || Sbjct 30648860 ATGCAGATCTTTGTGAAGACCTTGACAGGAAAGACCATCACTCTCGAGGTCGAGTCGTCG 30648801 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| || || | || || || || Sbjct 30648800 GACACGATCGACAATGTGAAGGCGAAGA-TCCAGGACAAGGAGGGGATCCCTCCTGACCA 30648742 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||||||||| || || || ||| || || | | |||||||| Sbjct 30648741 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGACAGTCGGACCCTGGCTGATTACAA 30648682 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 30648681 CATTCAGAAAGAGTCCAC 30648664 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || ||||| || || || ||||| ||||| ||||| ||| | Sbjct 30649088 ATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATCACCCTCGAGGTTGAGTCCTCT 30649029 Query 23671 GACACTGTTGAA-ATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| || | || | || | || ||||| || || | || || || || Sbjct 30649028 GATACAATTGATGATGTGAAGGCCAAGA-TTCAAGACAAGGAGGGCATTCCACCTGACCA 30648970 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || ||||| ||||| ||||| || || | ||||| | | |||||||| Sbjct 30648969 GCAACGTCTCATCTTTGCTGGCAAGCAACTAGAGGATGGCCGCACCCTCGCGGATTACAA 30648910 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 30648909 CATCCAGAAGGAGTCCAC 30648892 >seq12 Length=20407407 Score = 93.3 bits (102), Expect = 3e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||| ||||| | || ||||||||||||||||| ||||| |||||||| || |||||| Sbjct 12157568 GACAAGGAAGGGATCCCTCCAGATCAACAGCGTTTGATATTCGCCGGCAAGCAGCTGGAA 12157627 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCAC 23807 || | ||||| | | ||| |||||||| || || ||||| || Sbjct 12157628 GATGGGCGCACACTGGCCGACTACAACATTCAGAAGGAGTCAAC 12157671 >seq7 Length=28646061 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||| || || ||||| || | Sbjct 24916348 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTTGAGTCGTCT 24916407 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| || ||| | || ||||| || Sbjct 24916408 GACACGATCGACAATGTGAAGGCCAAGA-TCCAGGACAAGGAGGGTATTCCACCAGACCA 24916466 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || || || ||||| || || || || | ||||| | | |||||||| Sbjct 24916467 GCAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGCACCCTTGCAGATTACAA 24916526 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 24916527 CATCCAGAAGGAGTCCAC 24916544 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || || || || || ||||| || | Sbjct 26601192 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATTACCCTTGAGGTTGAGTCGTCC 26601251 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | | || || || ||||| || || | || || || || Sbjct 26601252 GACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 26601311 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| || || || || || || | ||||| | | ||||||||| Sbjct 26601312 CAGCGTCTGATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTTGCGGATTACAAC 26601371 Query 23791 ATACAAAAAGAGTCCACA 23808 || || || ||||||||| Sbjct 26601372 ATCCAGAAGGAGTCCACA 26601389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009550566096