Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq2 645 4e-180 seq8 515 5e-141 seq4 286 4e-72 seq5 120 4e-22 seq9 118 1e-21 seq6 84.2 3e-11 >seq2 Length=21549876 Score = 645 bits (714), Expect = 4e-180 Identities = 738/989 (75%), Gaps = 2/989 (0%) Strand=Plus/Plus Query 183195 CTTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACT 183254 ||||||| | ||||| || ||||| | ||||| || || | || ||||| || | Sbjct 19773069 CTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTT 19773128 Query 183255 GATGATTCCAACTCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCCTTCGTCGCTGCTC 183313 |||||| || || | ||| | ||||| |||| || || | |||||| ||||||| | Sbjct 19773129 GATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCC 19773187 Query 183314 CTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACA 183373 |||| || || || || || || || || || ||| |||| || | | || ||||||| Sbjct 19773188 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACA 19773247 Query 183374 ACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCA 183433 | || ||||||||||| || ||||| |||| || || ||| | ||||| || || | Sbjct 19773248 ATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAA 19773307 Query 183434 TCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAG 183493 | |||||||| ||||| | ||||||||| | || || ||||||||||| | || | | Sbjct 19773308 TTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTG 19773367 Query 183494 TCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACC 183553 | | |||||| | |||| || || || |||||||||||||||||| || || || Sbjct 19773368 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCC 19773427 Query 183554 GTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCG 183613 |||| ||||||||||||||||| |||||| ||| || |||||||| ||||| || | Sbjct 19773428 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 19773487 Query 183614 CTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTA 183673 |||| ||| || | || ||| | |||||||| ||| |||||||||||| | || | Sbjct 19773488 CTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 19773547 Query 183674 TCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACC 183733 | ||| || || |||| |||| |||| ||||| |||||||| |||||||| ||||| | Sbjct 19773548 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATC 19773607 Query 183734 CCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACG 183793 | || |||||| | ||||| |||||||| ||||| ||||| || |||||||| ||||| | Sbjct 19773608 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 19773667 Query 183794 GTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACTGAGTCTGAGTCACAGAACTATG 183853 |||| |||| || || || || | ||||||||||| || || || | | Sbjct 19773668 GTTCCTTGGTAACCTCTAGTTTGATTAGGGAAACCACTGAAAACGAATCTGCTAATGAGG 19773727 Query 183854 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTTG 183913 |||||| || |||||||| |||||||| || || ||||| || |||||||| || |||| Sbjct 19773728 GTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTG 19773787 Query 183914 GTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTTG 183973 | || | |||||||| |||||| |||||||| ||||| ||| | ||||||||| | | Sbjct 19773788 GCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGATCTTTACACTTCTTCTTGG 19773847 Query 183974 CTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCATTTA 184033 ||||||||| || || || || ||||| |||||| | ||| |||| |||||||| || | Sbjct 19773848 TTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 19773907 Query 184034 ACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAACA 184093 | || || || || || |||||||| || | ||||| | |||||||| || | | | Sbjct 19773908 ATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTACTA 19773967 Query 184094 CCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATG 184153 | | ||| || | ||||||||||| |||||| |||||||| |||||||| ||||||| Sbjct 19773968 CTTTGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATG 19774027 Query 184154 CTCACAACTTCCCTCTCGACCTTGCTGCT 184182 |||||||||||||||| ||||| |||||| Sbjct 19774028 CTCACAACTTCCCTCTAGACCTAGCTGCT 19774056 >seq8 Length=28014461 Score = 515 bits (570), Expect = 5e-141 Identities = 718/1004 (72%), Gaps = 2/1004 (0%) Strand=Plus/Minus Query 185971 TGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTT 186030 |||| |||||| | | | ||||| ||||| ||||| || |||||||| || | |||| Sbjct 17889475 TGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGCCTATTGCTTT 17889416 Query 186031 TTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCT 186090 |||| ||||||| | || | || || ||| |||| || ||||| ||||| || | Sbjct 17889415 TTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTT 17889356 Query 186091 GGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGGTGCTAATTTTCTCACGGCAGCAG 186150 |||||||||| || |||||| ||| || | || ||| ||||| | || ||||||| Sbjct 17889355 GGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTAACCGCAGCAG 17889296 Query 186151 TGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 186210 | || || ||||| | | | | || ||| | | ||||| ||||| || || | | Sbjct 17889295 TTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCGGAAGCAC 17889236 Query 186211 AAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 186270 |||| ||| | | || |||| ||| | || || || |||| |||||| || ||||| | Sbjct 17889235 AAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCATG 17889176 Query 186271 GAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCG-TCTCGTAGGT 186329 | || ||||| || |||||||||||| | || || |||||| | ||| ||| | | Sbjct 17889175 GGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT 17889116 Query 186330 ATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATTC 186389 | || || || ||||| ||| | || ||||| || |||||||| |||||| |||||| Sbjct 17889115 -TGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTCCGTATTC 17889057 Query 186390 CTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCA 186449 || || || || || || || ||| |||||||| || || ||||| || ||||| Sbjct 17889056 CTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCG 17888997 Query 186450 ATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCAC 186509 || ||| ||||| | | ||| |||||||||| || || ||||||||||| ||||| || Sbjct 17888996 ATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCAT 17888937 Query 186510 ATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTACT 186569 |||||||| || || || | | || | |||||||| | || || ||||| | || Sbjct 17888936 ATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCAACC 17888877 Query 186570 GTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATACG 186629 || ||||| ||||| | ||| || || || ||||| || ||| || || | | Sbjct 17888876 GTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCCA 17888817 Query 186630 ACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTTC 186689 || |||| |||||||| ||||| |||||||| || || | || ||||| || ||||| Sbjct 17888816 ACTCAAGCTGAAGAAACTTATTCCATGGTCACCGCTAATCGCTTTTGGTCCCAAATCTTT 17888757 Query 186690 GGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTTATG 186749 || |||| ||| |||||| |||||| | |||||||| ||||| ||||| || || | Sbjct 17888756 GGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCGGTCACC 17888697 Query 186750 GGTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACCTTCGTGCTTATGAC 186809 ||| | |||| | | |||||| | | || || ||||| ||||| ||||| |||||| Sbjct 17888696 GGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTGAACCTACGTGCCTATGAC 17888637 Query 186810 TTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAG 186869 || || ||||| | | ||||| || |||||||| || ||||| ||||| ||||| Sbjct 17888636 TTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAA 17888577 Query 186870 AATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGATCAACCACATGAA 186929 ||||| || || || || ||| | ||||| ||||||||| | |||||| || |||||| Sbjct 17888576 AATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAA 17888517 Query 186930 AACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCT 186973 || || |||| ||||| || || | ||| | || |||||||| Sbjct 17888516 AATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 17888473 >seq4 Length=20076173 Score = 286 bits (316), Expect = 4e-72 Identities = 399/557 (72%), Gaps = 2/557 (0%) Strand=Plus/Plus Query 185971 TGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTT 186030 |||| |||||| | | | ||||| ||||| ||||| || |||||||| || | |||| Sbjct 17460163 TGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGCCTATTGCTTT 17460222 Query 186031 TTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCT 186090 |||| ||||||| | || | || || ||| |||| || ||||| ||||| || | Sbjct 17460223 TTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTT 17460282 Query 186091 GGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGGTGCTAATTTTCTCACGGCAGCAG 186150 |||||||||| || |||||| ||| || | || ||| ||||| | || ||||||| Sbjct 17460283 GGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTAACCGCAGCAG 17460342 Query 186151 TGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 186210 | || || ||||| | | | | || ||| | | ||||| ||||| || || | | Sbjct 17460343 TTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCGGAAGCAC 17460402 Query 186211 AAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 186270 |||| ||| | | || |||| ||| | || || || |||| |||||| || ||||| | Sbjct 17460403 AAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCATG 17460462 Query 186271 GAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTC-GTCTCGTAGGT 186329 | || ||||| || |||||||||||| | || || |||||| | || |||| || Sbjct 17460463 GGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCT-GTTCAA 17460521 Query 186330 ATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATTC 186389 | || || || ||||| ||| | || ||||| || |||||||| |||||| |||||| Sbjct 17460522 TTGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTCCGTATTC 17460581 Query 186390 CTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCA 186449 || || || || || || || ||| |||||||| || || ||||| || ||||| Sbjct 17460582 CTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCG 17460641 Query 186450 ATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCAC 186509 || ||| ||||| | | ||| |||||||||| || || ||||||||||| ||||| || Sbjct 17460642 ATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCAT 17460701 Query 186510 ATGATGGGTGTAGCAGG 186526 |||||||| || || || Sbjct 17460702 ATGATGGGAGTTGCCGG 17460718 >seq5 Length=35065507 Score = 120 bits (132), Expect = 4e-22 Identities = 128/168 (76%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 183994 ATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCATTTAACCTGAATGGTTTTAACTTC 184053 || ||||| |||||| | ||| |||| |||||||| || || || ||||| || || ||| Sbjct 15426036 ATTTGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAATGGGTTCAATTTC 15425977 Query 184054 AACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAACACCTGGGCAGACGTTCTCAAC 184113 ||||| || | ||||| | |||||||| || | || || ||||| || | ||||| Sbjct 15425976 AACCA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAAC 15425918 Query 184114 CGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAAC 184161 ||||| ||||| |||||||| || ||||| |||||||||||| || Sbjct 15425917 CGTGCAAATCTTGCTATGGAAGTAATTCACGAACGTAATGCTCACCAC 15425870 >seq9 Length=29411429 Score = 118 bits (130), Expect = 1e-21 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 183903 TGGATACTTTGGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCA 183962 ||| || ||||| || | |||||||| |||||| |||||||| ||||||||| | || Sbjct 9641892 TGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACA 9641833 Query 183963 CTTCTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCAC 184022 ||||||| | ||||||||||| || || || || ||||| |||||| | ||| |||| || Sbjct 9641832 CTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTAC 9641773 Query 184023 TATGGCATTTAACCTGAA 184040 |||||| || || || || Sbjct 9641772 TATGGCTTTCAATCTTAA 9641755 >seq6 Length=36134596 Score = 84.2 bits (92), Expect = 3e-11 Identities = 153/222 (69%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 171000 TATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGTCGTGCTGGT 171059 || || |||||||| || || || ||| | || | ||| || || |||||||| Sbjct 34705558 TACATCCTTGATGCCGCCGAGACCGCTGGAGTGGAGCTTCCCTACTCATGCCGTGCTGGA 34705617 Query 171060 GCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCCGATCAATCT 171119 || || || ||||||||||| || || ||| ||| || || || || || ||| ||| Sbjct 34705618 GCATGCTCTACCTGTGCTGGTAAGATCGAGGCTGGCTCCGTCGACCAGTCGGATGGATCA 34705677 Query 171120 TTCCTTGATGATGATCAGATTGAATCAGGTTTCATTCTGACCTGCGTCTCATATCCTACA 171179 ||||||||||||| ||| ||| ||| | | ||||| || ||||| || ||| | Sbjct 34705678 TTCCTTGATGATGCGCAGCAGGAAGAAGGCTATGTGCTGACATGTGTCTCCTACCCT--A 34705735 Query 171180 AGT--GATTGTGTAATCTTGACTGAACAGGAAGAGAACCTTT 171219 ||| || || || ||| ||| | |||||| |||||| Sbjct 34705736 AGTCCGACTGCGTCATCCATACTCACAAGGAAGGAGACCTTT 34705777 Score = 82.4 bits (90), Expect = 9e-11 Identities = 152/221 (69%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 183369 AAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTA 183428 |||| | || ||||||||||| |||||||| |||| | | || || | ||| | || Sbjct 31663566 AAACGATATTATCTCTGGTGCCATTGTTCCTACTTCTACGACGATCAGATTACACCTTTA 31663625 Query 183429 TCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACT 183488 || || |||||||| ||||| | ||||||||| | || || ||||||||||| | || Sbjct 31663626 CCCGATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCT 31663685 Query 183489 CGTAGTCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTC 183548 | || | |||||| | ||| || || || || ||| |||| | || || Sbjct 31663686 AATTGTTCTACACTTCTTACTTGATGTAGCTTGTTATATAGGTTGTGATTAGGGCCTGAA 31663745 Query 183549 TTACCGTCTCG-GTATGCGTCCTTGGATCTGTGTTGCTTAT 183588 || |||| | |||| ||||||| ||| |||| | ||| Sbjct 31663746 TTTATGTCTAGAGTAT--GTCCTTGAATCGCTGTTACATAT 31663784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622070306689440