Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq2 632 2e-176 seq8 495 4e-135 seq4 266 4e-66 seq5 111 2e-19 seq9 105 8e-18 >seq2 Length=21549876 Score = 632 bits (700), Expect = 2e-176 Identities = 738/994 (74%), Gaps = 2/994 (0%) Strand=Plus/Plus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 ||||| |||||| |||| |||| | || ||||| || |||| ||||||||||| || Sbjct 19773070 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 19773129 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCC 177716 ||||||||||| | | | || || ||||| || || |||| ||| ||||||| || Sbjct 19773130 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCC 19773188 Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAA 177776 ||| || || || || || || ||||| || || ||||||| | | || || ||||| Sbjct 19773189 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAA 19773248 Query 177777 CATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCAT 177836 || || |||||||| || ||||| ||||| || || || | ||||| || || || Sbjct 19773249 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 19773308 Query 177837 CTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTAT 177896 |||||||| || ||| | ||||||||| | |||||||||||||||| | || || | Sbjct 19773309 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 19773368 Query 177897 CTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTTTCTTACCG 177956 | |||||| | | ||| | | || |||||||||||||||||||| || ||| Sbjct 19773369 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCG 19773428 Query 177957 CCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTGC 178016 || ||||||||||| ||||| ||| ||||| || ||||| || || || || |||| Sbjct 19773429 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 19773488 Query 178017 TGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTAT 178076 ||| ||| | |||| ||| | |||||||| ||||||||| | |||||| | || || Sbjct 19773489 TGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAAT 19773548 Query 178077 CAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 178136 ||| || ||||||| ||| |||| ||||| |||||||| |||||||| ||||| || Sbjct 19773549 ATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCC 19773608 Query 178137 CTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGG 178196 || |||||||| || || |||||||| || || ||||| || |||||||| ||||| || Sbjct 19773609 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGG 19773668 Query 178197 TTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACCGAGAACGAAAGTCAGAACTATGG 178256 ||| |||| || || || || | |||||||| || |||||| | || | || Sbjct 19773669 TTCCTTGGTAACCTCTAGTTTGATTAGGGAAACCACTGAAAACGAATCTGCTAATGAGGG 19773728 Query 178257 TTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTCGG 178316 ||||| || |||||||| |||||||| || || || || || ||||||||||| || || Sbjct 19773729 TTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGG 19773788 Query 178317 TCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGC 178376 || | ||||||||||| || || |||||||| || || | ||||||||| | | Sbjct 19773789 CCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGATCTTTACACTTCTTCTTGGT 19773848 Query 178377 AGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAA 178436 || |||||||| || || || |||||||||||| | ||| |||| || ||||| ||||| Sbjct 19773849 TGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAA 19773908 Query 178437 CCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAACAC 178496 || ||||| ||||| |||||||| || | | ||||| || || || | | || Sbjct 19773909 TCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTACTAC 19773968 Query 178497 CTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATGC 178556 | ||| || | ||||||||||| ||||||||||||||| |||||||| |||||||| Sbjct 19773969 TTTGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGC 19774028 Query 178557 TCACAACTTCCCTCTTGACCTCGCTGCTGCTGAA 178590 ||||||||||||||| ||||| |||||| |||| Sbjct 19774029 TCACAACTTCCCTCTAGACCTAGCTGCTCTTGAA 19774062 >seq8 Length=28014461 Score = 495 bits (548), Expect = 4e-135 Identities = 722/1015 (71%), Gaps = 4/1015 (0%) Strand=Plus/Minus Query 178839 TTTGATGTACTCGATGACTGGCTTAAGC-GTGATCGGTTCGTTTTTGTTGGTTGGTCAGG 178897 |||||| | | || |||||| ||| | | || || || |||||||| || ||||| || Sbjct 17889485 TTTGATATTATGGACGACTGG-TTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGG 17889427 Query 178898 TCTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAACATT 178957 || | || || ||| |||||| | || | || |||||| | || || ||||| || Sbjct 17889426 CCTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTT 17889367 Query 178958 CGTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATTTCCT 179017 || || || |||||||| || || | || ||| ||| | || || || |||||| | Sbjct 17889366 TGTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTT 17889307 Query 179018 TACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTATGGGG 179077 || || || || || || ||||| | | | | ||| || | | || |||||||| Sbjct 17889306 AACCGCAGCAGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGG 17889247 Query 179078 TCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCTTTTGT 179137 || ||||| || || ||||| || ||| ||| | || || || ||| ||||||| Sbjct 17889246 CCCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGT 17889187 Query 179138 GGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCGCACG 179197 || ||||| || || || || || |||||||||||| | || || |||||| | || || Sbjct 17889186 TGCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCG 17889127 Query 179198 -TCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTG 179256 ||| || | | || ||||| |||||||| | || ||||| ||||| ||||| |||| Sbjct 17889126 GTCTGTTCAAT-TGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTG 17889068 Query 179257 TGTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTG 179316 | || || || || || ||||| || || || ||| ||||||||||||||| |||| Sbjct 17889067 TTTCCGTATTCCTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTTG 17889008 Query 179317 GAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCA 179376 | || |||||||| || || ||| | |||||| | || || || || || |||||| | | Sbjct 17889007 GCGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGA 17888948 Query 179377 ACCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCCATTC 179436 |||| || || |||||||| || || || | | |||| || |||| || || |||| Sbjct 17888947 ACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTC 17888888 Query 179437 ATGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTCAAGG 179496 |||| || || || || ||||| || ||||| ||| |||| ||||||| ||| | Sbjct 17888887 ATGGGGCAACCGTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGCG 17888828 Query 179497 CATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGT 179556 | || | || || |||| || || || ||||| ||||| || || || || || |||| Sbjct 17888827 CTTTTAACCCAACTCAAGCTGAAGAAACTTATTCCATGGTCACCGCTAATCGCTTTTGGT 17888768 Query 179557 CTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTTG 179616 | || ||||||||| | || || |||||| |||||| |||||||||||||| | |||| Sbjct 17888767 CCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTG 17888708 Query 179617 TTCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTATTGGTCTTGCACTTAACCTTA 179676 | || |||| ||| | |||| | ||||| | | || || || || ||||| Sbjct 17888707 TACCGGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTGAACCTAC 17888648 Query 179677 GAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAGACGT 179736 | || |||||||| ||||| || || ||| | || || || |||||||| || ||||| | Sbjct 17888647 GTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTT 17888588 Query 179737 TCTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGTCGATC 179796 |||| ||||| || || || || || || ||| | ||||| ||||||||| | |||| Sbjct 17888587 TCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATC 17888528 Query 179797 AACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 179851 | || |||||||| || |||| ||||| || || | ||| | || |||||||| Sbjct 17888527 AGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 17888473 >seq4 Length=20076173 Score = 266 bits (294), Expect = 4e-66 Identities = 403/568 (71%), Gaps = 4/568 (1%) Strand=Plus/Plus Query 178839 TTTGATGTACTCGATGACTGGCTTAAGC-GTGATCGGTTCGTTTTTGTTGGTTGGTCAGG 178897 |||||| | | || |||||| ||| | | || || || |||||||| || ||||| || Sbjct 17460153 TTTGATATTATGGACGACTGG-TTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGG 17460211 Query 178898 TCTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAACATT 178957 || | || || ||| |||||| | || | || |||||| | || || ||||| || Sbjct 17460212 CCTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTT 17460271 Query 178958 CGTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATTTCCT 179017 || || || |||||||| || || | || ||| ||| | || || || |||||| | Sbjct 17460272 TGTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTT 17460331 Query 179018 TACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTATGGGG 179077 || || || || || || ||||| | | | | ||| || | | || |||||||| Sbjct 17460332 AACCGCAGCAGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGG 17460391 Query 179078 TCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCTTTTGT 179137 || ||||| || || ||||| || ||| ||| | || || || ||| ||||||| Sbjct 17460392 CCCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGT 17460451 Query 179138 GGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCGCAC- 179196 || ||||| || || || || || |||||||||||| | || || |||||| | || | Sbjct 17460452 TGCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCG 17460511 Query 179197 GTCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTG 179256 |||| || | | || ||||| |||||||| | || ||||| ||||| ||||| |||| Sbjct 17460512 GTCTGTTCAAT-TGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTG 17460570 Query 179257 TGTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTG 179316 | || || || || || ||||| || || || ||| ||||||||||||||| |||| Sbjct 17460571 TTTCCGTATTCCTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTTG 17460630 Query 179317 GAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCA 179376 | || |||||||| || || ||| | |||||| | || || || || || |||||| | | Sbjct 17460631 GCGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGA 17460690 Query 179377 ACCCGTTCCACATGATGGGTGTAGCAGG 179404 |||| || || |||||||| || || || Sbjct 17460691 ACCCATTTCATATGATGGGAGTTGCCGG 17460718 >seq5 Length=35065507 Score = 111 bits (122), Expect = 2e-19 Identities = 126/168 (75%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 178396 ATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTC 178455 || |||||||||||| | ||| |||| || ||||| ||||| || || || ||||| ||| Sbjct 15426036 ATTTGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAATGGGTTCAATTTC 15425977 Query 178456 AACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTCAAC 178515 ||||| || | | ||||| || || || | || || ||||| || | ||||| Sbjct 15425976 AACCA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAAC 15425918 Query 178516 CGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATGCTCACAAC 178563 ||||| ||||| ||||||||| || ||||| |||||||||||| || Sbjct 15425917 CGTGCAAATCTTGCTATGGAAGTAATTCACGAACGTAATGCTCACCAC 15425870 >seq9 Length=29411429 Score = 105 bits (116), Expect = 8e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 178305 TGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCA 178364 |||||| || || || | ||||||||||| || || |||||||| ||||| | || Sbjct 9641892 TGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACA 9641833 Query 178365 CTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCAC 178424 ||||||| | || || |||||||| || || || |||||||||||| | ||| |||| || Sbjct 9641832 CTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTAC 9641773 Query 178425 CATGGCATTCAACCTCAA 178442 ||||| ||||| || || Sbjct 9641772 TATGGCTTTCAATCTTAA 9641755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596307110553920