Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq6 152 1e-31 seq5 107 4e-18 seq9 105 1e-17 seq1 105 1e-17 seq12 104 5e-17 seq11 104 5e-17 seq10 104 5e-17 seq8 104 5e-17 seq3 98.7 2e-15 >seq6 Length=34615992 Score = 152 bits (168), Expect = 1e-31 Identities = 310/455 (68%), Gaps = 8/455 (2%) Strand=Plus/Minus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 || |||||||| |||||||||| | || || || || || | || || || ||| Sbjct 8273144 TTCGCCGAGCGCCTCGTCGCCTTCGCTTGCGTCGAGGGGATCTTCTTCTCGGGTTCCTTC 8273085 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292 ||||||||||||||||| ||| || | ||||| |||||| | || |||||| Sbjct 8273084 TGCGCCATCTTTTGGCTCAAGAAGCGGGGCCTCATGCCGGGCCTCACCTTCTCCAACGAG 8273025 Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAGCTC 230352 ||||| ||||||||||| || || | |||| | || | || | ||| Sbjct 8273024 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTATACGAACTCCTC 8272965 Query 230353 CAGAACAAGCTACCATTCGAGACG---GTCAAACAAATCATTACAGAAGCAGTTGAAAAC 230409 | |||||| | | |||| | ||| | ||| | | || || || || | | Sbjct 8272964 CGCGGCAAGCT-CGA--CGAGGCCCGTGTCCGCGAGATCGTCGCCGACGCCGTCGACATC 8272908 Query 230410 GAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACT 230468 || | ||||||| | || ||||| | || ||||| || | |||||||||| || || Sbjct 8272907 GAGAGGGAGTTCGTCTGCGACGCGCTCCCC-GTCGCGCTCGTCGGCATGAACGGCGACCT 8272849 Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528 ||| | ||||||||||| ||||| ||||||||| | | | || || || | | |||| Sbjct 8272848 CATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCATGGCGCTCGGCTGCAAGAA 8272789 Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588 |||||||| ||||| || | | ||||||||||| || || || || ||||| Sbjct 8272788 GATGTACAACGTCGCCAACCCTTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGAC 8272729 Query 230589 CAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623 |||||||||||| ||||| ||| | ||||| |||| Sbjct 8272728 CAACTTCTTCGAGAAGCGCGTCGGCGACTACCAGA 8272694 Score = 143 bits (158), Expect = 6e-29 Identities = 312/459 (68%), Gaps = 16/459 (3%) Strand=Plus/Plus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 || |||||||| ||||| |||| | || || || || || | || || || ||| Sbjct 933723 TTCGCCGAGCGCCTCGTGGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCATTC 933782 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292 ||||||||||| ||||| ||| || | ||||| |||||| | || |||||| Sbjct 933783 TGCGCCATCTTCTGGCTCAAGAAGCGGGGACTCATGCCGGGCCTCACCTTCTCCAACGAG 933842 Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCG---GCGAGCT-TATGTATTCAAA 230348 ||||| ||||||||||||||||| | |||| || || || | || Sbjct 933843 CTCATCTCCCGCGACGAGGGTCTCCACTGCGACTTCGCTTGCCTCCTCTACGACCTC--- 933899 Query 230349 GCTCCAGAACAAGCTACCATTCGAGACG---GTCAAACAAATCATTACAGAAGCAGTTGA 230405 |||| |||||| | || ||| || ||| || | ||| | | || || || || Sbjct 933900 -CTCCGCGGCAAGCT-CGAT--GAGGCGCGCGTCCAAGACATCGTCGCCGACGCCGTCGA 933955 Query 230406 AAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTG 230464 | ||| | ||||||| | || || || | || ||||| || | || ||||||| | Sbjct 933956 CATCGAGAGGGAGTTCGTCTGCGATGCGCTCCCC-GTCGCGCTCGTCGGGATGAACGGCG 934014 Query 230465 AACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACG 230524 | || ||| | ||||||||||| ||||| |||||||| | | | || || || | | Sbjct 934015 AGCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGGCTGCTCATGGCGCTCGGATGCA 934074 Query 230525 AGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGA 230584 |||| ||||||| ||||| || | | ||||||||||| || || || || | Sbjct 934075 AGAAGATGTACAATGTCGCCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCA 934134 Query 230585 AGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623 |||||||||||||||| ||||||||| | ||||| |||| Sbjct 934135 AGACCAACTTCTTCGAGAAGCGTGTCGGCGACTACCAGA 934173 >seq5 Length=31082981 Score = 107 bits (118), Expect = 4e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||||||||||||||||||||||||| || || |||| || |||||||||||||||| Sbjct 23870400 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 23870341 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 23870340 GCCCCACGGTGGGC 23870327 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 27254378 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 27254319 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 27254318 CCCACGGTGGGC 27254307 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 27597561 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 27597502 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 27597501 CCCACGGTGGGC 27597490 >seq9 Length=26294017 Score = 105 bits (116), Expect = 1e-17 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765 ||| ||||||||||||||||||||||||||| || || |||| || |||||||||||||| Sbjct 13849637 GCTGGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTC 13849578 Query 165766 GAGCCCCACGATGGGC 165781 |||||||||| ||||| Sbjct 13849577 GAGCCCCACGGTGGGC 13849562 >seq1 Length=46096743 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 44971257 TGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 44971198 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 44971197 CCCCACGGTGGGC 44971185 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 15829283 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 15829342 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 15829343 CCCACGGTGGGC 15829354 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 32806052 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 32806111 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 32806112 CCCACGGTGGGC 32806123 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 38696907 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 38696966 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 38696967 CCCACGGTGGGC 38696978 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 46006590 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 46006649 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 46006650 CCCACGGTGGGC 46006661 >seq12 Length=27944835 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 24350132 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 24350191 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 24350192 CCCACGGTGGGC 24350203 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 24374790 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 24374849 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 24374850 CCCACGGTGGGC 24374861 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 24625674 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 24625615 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 24625614 CCCACGGTGGGC 24625603 >seq11 Length=28494620 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 28264792 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 28264851 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 28264852 CCCACGGTGGGC 28264863 >seq10 Length=25992119 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 19480787 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 19480728 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 19480727 CCCACGGTGGGC 19480716 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 23948832 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 23948773 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 23948772 CCCACGGTGGGC 23948761 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||| ||| Sbjct 23949002 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCAAGC 23948943 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 23948942 CCCACGGTGGGC 23948931 Score = 96.9 bits (106), Expect = 7e-15 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 |||||||||||||||||||||||||| || || |||| || ||||||||||||||||||| Sbjct 17588285 CCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCC 17588226 Query 165771 CCACGATGGGC 165781 ||| | ||||| Sbjct 17588225 CCAAGGTGGGC 17588215 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||| ||||||||| || || |||| || ||| ||||||||| |||| Sbjct 23949169 GCCCGTCTAGCTCAGTC-GTAGAGCGCAAGGCTCTTAACCTTGTGATCGTGGGTTTGAGC 23949111 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 23949110 CCCACGGTGGGC 23949099 >seq8 Length=29853973 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 19785766 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 19785707 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 19785706 CCCACGGTGGGC 19785695 Score = 104 bits (114), Expect = 5e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 || ||||||||||||||||||||||||||| || || |||| || ||||||||||||||| Sbjct 20106567 CTGGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 20106508 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 20106507 AGCCCCACGGTGGGC 20106493 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 20110413 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 20110354 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 20110353 CCCACGGTGGGC 20110342 >seq3 Length=38925377 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 18251559 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 18251618 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 18251619 CCCACGGTGGGC 18251630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823837359560