Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq6 113 5e-20 >seq6 Length=34615992 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 ||| || ||||| || | ||| |||||||| || |||||||| | ||| | |||| Sbjct 2940982 AGTGCCAGCATTGAAAAGGGTCGGAGAAGCATGGGTAAACCAGCGCTGAGACATAAGATG 2941041 Query 54484 GTACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 54542 ||| |||| |||||| || || || || | ||| || || || |||| || | ||||| Sbjct 2941042 GTAGGTCTTGATAGCAGACTCAATGTCATCCTTG-TGTATCCCCACTGAAACTCTCATTA 2941100 Query 54543 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCA 54602 |||||||||| || |||||||||| ||| | | |||||| | ||| || | || | Sbjct 2941101 ACATGTGCTGCGGCCTTTCAACGACCTTCCCGCCAAGTTTCAGGAGGTAAGACCTCTCTA 2941160 Query 54603 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||| || |||||||| |||| || |||||| | || ||||| || Sbjct 2941161 GAGTCTTGAAACCAAAGTAGTCATAATCAAAGTCCCTATCATAAATTAT 2941209 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || ||||| |||||||| ||||||||||| | || | |||||||| || ||||| Sbjct 933883 CAAGCGAAGTCGCAGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 933824 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 24253 || ||||| || || ||||| || ||||| || |||| |||| ||||| || || ||||| Sbjct 933823 CCCGGCATGAGTCCCCGCTTCTTGAGCCAGAAGATGG-CGCAGAATGAGCCCGAGAAGAA 933765 Query 24254 AATTCCTTCTAC 24265 || || || || Sbjct 933764 GATCCCCTCGAC 933753 Score = 86.0 bits (94), Expect = 7e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 ||| || ||||| | || | || || | ||| |||| | | ||| |||| ||| || Sbjct 2940661 TCCACCTTGATCAACATAACGGGCCGTATCATTGAAAACACGTAGCATAGGAACAATCCC 2940720 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 ||| || | ||||| || || ||||||||| ||| | || |||||||| || ||| Sbjct 2940721 ATTAGAGGTTCCATTTGTTCCTCGGATATAGCTCCCAGTAGCTCGAATATTGTGAACTGA 2940780 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 || ||| || || || || ||| || | || ||| || || ||||||||||| Sbjct 2940781 TACACCAATGCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAAAGTATCATAGAT 2940840 Query 54364 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 54405 ||||| || || ||||| ||||| | || |||||||| Sbjct 2940841 TCCCTCAATGCTGTCATCTTTCATGCAGATAAGGAAACAGCT 2940882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721510941760