Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq2 113 7e-20 >seq2 Length=39559433 Score = 113 bits (124), Expect = 7e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| || ||||| || || || || | ||| |||| ||| Sbjct 31556601 ATGCAGATCTTTGTGAAGACCCTTACAGGAAAGACGATCACAGTTGAGGTTGAGAGCTC- 31556543 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||||||| ||| | || || || || || || || ||||| ||||||||||| Sbjct 31556542 TGATACAATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCACCTGATCA 31556483 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || |||||||| ||||| ||||| || |||||||| | || ||||| | || || || Sbjct 31556482 GCAGAGGCTTATCTTTGCTGGAAAGCAGCTAGAGGATGGACGCACATTGGCTGACTACAA 31556423 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || || ||| | || ||||| | || | ||||| || || Sbjct 31556422 CATCCAGAAGGAGTCTACTCTTCACTTGGTCCTCCGCCTCCGAGGAGGGAT 31556372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755455886681600