Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq12 87.8 1e-12 seq11 87.8 1e-12 >seq12 Length=27944835 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 20430 CCAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATAT 20489 ||| ||||| |||| ||| || || || || || ||||| ||||| || |||||||| Sbjct 16041142 CCAGTTTTATGTTGAGAATGGGGAGTTATCATGCCAGATGTACCAACGCTCTGCTGATAT 16041201 Query 20490 GGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACA 20549 ||| || ||||| || ||||| |||||| ||| | || || || | |||||||||||| Sbjct 16041202 GGGGCTTGGTGTGCCATTCAACATTGCATCATATTCTCTTCTGACATGTATGATTGCACA 16041261 Query 20550 TGT 20552 || Sbjct 16041262 AGT 16041264 >seq11 Length=28494620 Score = 87.8 bits (96), Expect = 1e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 20458 TCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCA 20517 || || || ||||||||||| || |||||||||||||| |||||||| ||||| || ||| Sbjct 18049480 TCATGCCAGATGTATCAACGCTCTGCTGATATGGGACTTGGTGTTCCATTCAACATCGCA 18049539 Query 20518 AGTTATGCGCTGCTTACGTATATGATTGCACATGTT 20553 ||| | || || || || |||||||| |||||| Sbjct 18049540 TCATATTCTCTTCTGACATACATGATTGCTCATGTT 18049575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399183941619340