Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq6 102 2e-16 seq2 91.5 3e-13 seq12 86.0 1e-11 >seq6 Length=34615992 Score = 102 bits (112), Expect = 2e-16 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||| ||| | || | ||||| || ||||||||||| ||||| || || || | ||||| Sbjct 934169 GTAGTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 934110 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| ||||||||| ||||||| ||| | | | || ||| | ||| Sbjct 934109 CCAGTCGAACGGGTTGGCGACATTGTACATCTTCTTGCATCCGAGCGCCATGAGCAGCCG 934050 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| || || |||| |||||||| ||||| || || | || |||| ||||||||| Sbjct 934049 GTCGGCGACGAACTCGATGTACTGGCTCATGAGCTCGCCGTTCATCCCGACGAGCGCGAC 933990 Query 157438 GGGAAGCGC 157446 ||| ||||| Sbjct 933989 GGGGAGCGC 933981 Score = 102 bits (112), Expect = 2e-16 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||| ||| | || | ||||| || ||||||||||| ||||| || || || | ||||| Sbjct 8272698 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 8272757 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| ||||||||| |||||||| ||| | | | || ||| | || | Sbjct 8272758 CCAGTCGAAAGGGTTGGCGACGTTGTACATCTTCTTGCAGCCGAGCGCCATGAGGAGGCG 8272817 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| || || |||| |||||||| ||||| | || | || |||| ||||||||| Sbjct 8272818 GTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGAC 8272877 Query 157438 GGGAAGCGC 157446 ||| ||||| Sbjct 8272878 GGGGAGCGC 8272886 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || || || || | ||||| |||||| || || |||| || || ||||| ||| || Sbjct 2941194 GACTTTGATTATGACTACTTTGGTTTCAAGACTCTAGAGAGGTCTTACCTCCTGAAACTT 2941135 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | || ||| |||| ||| | ||||||||||| ||| |||| | || ||||| ||| Sbjct 2941134 GGCGGGAAGGTCGTTGAAAGGCCGCAGCACATGTTAATGAGAGTTTCAGTGGGGATACAC 2941075 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACA 248988 ||||||||||| ||| | || |||| ||| ||| | | |||||| | || Sbjct 2941074 AAGGATGACATTGAGTCTGCTATCAAGACCTACCATCTTATGTCTCAGCGCTGGTTTACC 2941015 Query 248989 CATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 ||||| | ||||| || ||||| || || || Sbjct 2941014 CATGCTTCTCCGACCCTTTTCAATGCTGGCAC 2940983 >seq2 Length=39559433 Score = 91.5 bits (100), Expect = 3e-13 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 248805 CAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAA 248864 || |||||| || || || | ||||| ||| || || || |||| ||| ||||| | || Sbjct 38035184 CAGAGATTTTGACTATGACTACTTTGGTTTTAAGACCCTTGAGAGATCTTATCTGTTAAA 38035243 Query 248865 AATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGAT 248924 | ||| ||| ||| | |||||| || ||||| ||| | ||| |||| || | ||||| Sbjct 38035244 AGTTGGTGGAAAGGTTGTGGAAAGACCACAGCATATGCTAATGAGAGTTTCTATTGGGAT 38035303 Query 248925 TCACAAGGATGACATAGAGAGCGTGC--TCGAGACGTACACCGGAATGAGTGAACGCTGG 248982 ||||||||||| || || | | ||| || | || ||| | ||| | | |||||| Sbjct 38035304 ACACAAGGATGATATTGA-ATC-TGCTATCAAAACATACCACATGATGTCTCAGCGCTGG 38035361 Query 248983 ATGACACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 | || ||||| | || || || ||||| || || || Sbjct 38035362 TTTACTCATGCTTCGCCAACCCTTTTCAATGCTGGCAC 38035399 >seq12 Length=27944835 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 239762 GTACTACGAATTCTTGGGTGTTGATGCGGGCGCCGGTGACGAAGAGATAAAGAAAGCGTA 239821 ||||||||| || | || || | ||||||| |||| ||||| ||| ||||| Sbjct 26858927 GTACTACGACCTCCTCGGCGTGCCGCCCGGCGCCGACGACGGCGAGATCAAGCGCGCGTA 26858986 Query 239822 CCGGCGTCTCGCCCTGCAGCACCACCCGGACAAGAACGGCGACCCGGAGAAGTTCAAGCA 239881 |||||| |||| || |||||||||||||||| ||||||| ||| | ||||||| | Sbjct 26858987 CCGGCGCGCCGCCGTGACGCACCACCCGGACAAGGGCGGCGACGAGGAAACGTTCAAGGA 26859046 Query 239882 GTTGACCGATGTGTACGACGTGCTCAAAGATCCCG 239916 | || || | |||| | ||||||| || |||| Sbjct 26859047 GGTGGCCCGCGCGTACCAGGTGCTCAGCGACCCCG 26859081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073766234908416