Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq5 82.4 6e-11 >seq5 Length=31082981 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| || ||||| || | ||| || || || ||||| |||||||||||||| ||| Sbjct 9801595 CCTCCCCTCAGCCTAAGCACAAGGTGTAGAGTGGACTCTTTCTGAATGTTGTAGTCTGCC 9801654 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||| || | || ||||| || ||||||| | |||||||| ||| Sbjct 9801655 AAGGTCCGACCATCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGTTGATCTGGGGGG 9801714 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || ||||| || || | | ||| || | | | ||||| || ||| Sbjct 9801715 ATACCCTCCTTGTCCTGGATCTTTGCCTTCACGTTGTCGATCGTGTCTGAGGACTCAACC 9801774 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | |||||| | || || ||||| || || ||||| || |||||| Sbjct 9801775 TCCAAAGTGATGGTCTTTCCTGTCAAGGTCTTCACAAAGATCTGCATT 9801822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343944520940