Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq6 95.1 2e-14 >seq6 Length=34615992 Score = 95.1 bits (104), Expect = 2e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 ||| || ||||| || | ||| |||||||| || |||||||| | ||| | |||| Sbjct 2940982 AGTGCCAGCATTGAAAAGGGTCGGAGAAGCATGGGTAAACCAGCGCTGAGACATAAGATG 2941041 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63780 ||| |||| ||||| || || || || | ||| || || || |||| || | ||||| Sbjct 2941042 GTAGGTCTTGATAGCAGACTCAATGTCATCCTTG-TGTATCCCCACTGAAACTCTCATTA 2941100 Query 63781 ACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63840 |||||||||| || |||||||| | || | | ||||| | ||| || | || | Sbjct 2941101 ACATGTGCTGCGGCCTTTCAACGACCTTCCCGCCAAGTTTCAGGAGGTAAGACCTCTCTA 2941160 Query 63841 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 ||| || |||||||| |||| || |||||| | || ||||| || Sbjct 2941161 GAGTCTTGAAACCAAAGTAGTCATAATCAAAGTCCCTATCATAAATTAT 2941209 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| ||||||||||| |||||||| | || | ||||| || || ||||| Sbjct 8272984 CAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 8273043 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| ||||| ||||| || |||||||| |||| ||| || || || |||||| Sbjct 8273044 CCCGGCATGAGGCCCCGCTTCTTGAGCCAAAAGATGGCGCAGAAGGAACCCGAGAAGAAG 8273103 Query 33702 ATTCCTTCTACTGCAGCAAAGGC 33724 || || || || ||| ||||| Sbjct 8273104 ATCCCCTCGACGCAAGCGAAGGC 8273126 Score = 86.0 bits (94), Expect = 8e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| |||||||| ||||||||||| | || | ||||| || || ||||| Sbjct 933883 CAAGCGAAGTCGCAGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 933824 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || || ||||| || ||||| || |||| |||||| || || |||||| Sbjct 933823 CCCGGCATGAGTCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAATGAGCCCGAGAAGAAG 933764 Query 33702 ATTCCTTCTACTGCA-GCAAAGGC 33724 || || || || ||| || ||||| Sbjct 933763 ATCCCCTCGAC-GCAGGCGAAGGC 933741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817505527360