Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq6 104 3e-17 >seq6 Length=34615992 Score = 104 bits (114), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 ||| || ||||| || | ||| |||||||| || |||||||| | ||| | |||| Sbjct 2940982 AGTGCCAGCATTGAAAAGGGTCGGAGAAGCATGGGTAAACCAGCGCTGAGACATAAGATG 2941041 Query 66515 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 66573 ||| |||| ||||| || || || || | ||| || || || |||| || | ||||| Sbjct 2941042 GTAGGTCTTGATAGCAGACTCAATGTCATCCTTG-TGTATCCCCACTGAAACTCTCATTA 2941100 Query 66574 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 66633 |||||||||| || |||||||||| ||| | | ||||| | ||| || | || | Sbjct 2941101 ACATGTGCTGCGGCCTTTCAACGACCTTCCCGCCAAGTTTCAGGAGGTAAGACCTCTCTA 2941160 Query 66634 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 ||| || |||||||| |||| || |||||| | || ||||| || Sbjct 2941161 GAGTCTTGAAACCAAAGTAGTCATAATCAAAGTCCCTATCATAAATTAT 2941209 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 ||| || ||||| | || | || || | ||| |||| | | ||| |||| ||| || Sbjct 2940661 TCCACCTTGATCAACATAACGGGCCGTATCATTGAAAACACGTAGCATAGGAACAATCCC 2940720 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 ||| || || ||||| || || ||||||||| ||| | || |||||||| || ||| Sbjct 2940721 ATTAGAGGTTCCATTTGTTCCTCGGATATAGCTCCCAGTAGCTCGAATATTGTGAACTGA 2940780 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 || ||| || || || || ||| || | || ||| || || ||||||||||| Sbjct 2940781 TACACCAATGCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAAAGTATCATAGAT 2940840 Query 66395 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 66436 ||||| || || ||||| ||||| | || |||||||| Sbjct 2940841 TCCCTCAATGCTGTCATCTTTCATGCAGATAAGGAAACAGCT 2940882 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || ||||| |||||||| ||||||||||| | || | |||||||| || ||||| Sbjct 933883 CAAGCGAAGTCGCAGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 933824 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 36276 || ||||| || || ||||| || ||||| || |||| |||| ||||| || || ||||| Sbjct 933823 CCCGGCATGAGTCCCCGCTTCTTGAGCCAGAAGATGG-CGCAGAATGAGCCCGAGAAGAA 933765 Query 36277 AATTCCTTCTAC 36288 || || || || Sbjct 933764 GATCCCCTCGAC 933753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172701274080