Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq5 100 3e-16 >seq5 Length=31082981 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || ||||| || |||||| |||||||||| ||||| || || || ||||| || ||| Sbjct 26219605 TCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTG 26219546 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| ||| || | | || | || || | || ||||||||||| ||| | Sbjct 26219545 TCCTGGATCTTTGCCTTAACATTGTCAATGGTATCAGAGGACTCCACCTCAAGGGTGATA 26219486 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| |||||||| || || || ||||||||||| Sbjct 26219485 GTCTTTCCGGTCAAGGTCTTGACAAATATTTGCAT 26219451 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || |||||||| ||||| || |||| ||| |||||||| || || Sbjct 9801397 GTGGACTCCTTCTGAATGTTGTAATCAGCCAGAGTGCGTCCGTCCTCGAGCTGCTTGCCG 9801456 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || || ||||| || ||||| ||||| || ||||| ||| | || | || Sbjct 9801457 GCGAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCC-TGAATCTTCGCCTT 9801515 Query 139688 AGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||| |||| | ||| ||||||| || | ||||||||||||| || Sbjct 9801516 CACATTGTCGATTGTATCGGAAGACTCGACCTCAAGCGTAATGGTCTTGCCGGTCAGGGT 9801575 Query 139747 TTTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 9801576 CTTGACGAAAATCTGCAT 9801593 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||| || || ||||| || || | |||| ||||||||||| Sbjct 26219425 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTGCGGCCATCTTCGAGCTGC 26219366 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || |||||| |||| ||||| ||||| || ||||| || || || ||||| |||||| Sbjct 26219365 TTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGGATTCCCTCCTTGTCCTGGATTTTG 26219306 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | || | || || | || ||| ||||||| ||| | |||||||| || Sbjct 26219305 GCCTTGACGTTATCAATGGTATCCGAGGACTCAACCTCAAGGGTTATGGTCTTGCCAGTG 26219246 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | || || ||||| || ||||| Sbjct 26219245 AGAGTCTTCACGAAGATCTGCAT 26219223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063925590400