Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq6 104 3e-17 seq2 86.0 9e-12 >seq6 Length=34615992 Score = 104 bits (114), Expect = 3e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| |||||||| ||||||||||| | || || |||||||| || ||||| Sbjct 933883 CAAGCGAAGTCGCAGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 933824 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||| || || ||||| || ||||| || |||| |||| ||||| || || ||||| Sbjct 933823 CCCGGCATGAGTCCCCGCTTCTTGAGCCAGAAGATGG-CGCAGAATGAGCCCGAGAAGAA 933765 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTC 50114 ||| || || || ||| ||||| || || | ||| Sbjct 933764 GATCCCCTCGACGCAGGCGAAGGCCACGAGGCGCTC 933729 Score = 104 bits (114), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 ||| || ||||| || | ||| |||||||| || |||||||| | ||||| |||| Sbjct 2940982 AGTGCCAGCATTGAAAAGGGTCGGAGAAGCATGGGTAAACCAGCGCTGAGACATAAGATG 2941041 Query 80394 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTA 80452 ||| |||| ||||| || || || || | ||| || || || || | || | ||||| Sbjct 2941042 GTAGGTCTTGATAGCAGACTCAATGTCATCCTTG-TGTATCCCCACTGAAACTCTCATTA 2941100 Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCA 80512 |||||||||| || |||||||||| ||| | ||||| | |||||| | || | Sbjct 2941101 ACATGTGCTGCGGCCTTTCAACGACCTTCCCGCCAAGTTTCAGGAGGTAAGACCTCTCTA 2941160 Query 80513 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 ||| || |||||||| |||| || |||||| | || ||||| || Sbjct 2941161 GAGTCTTGAAACCAAAGTAGTCATAATCAAAGTCCCTATCATAAATTAT 2941209 Score = 104 bits (114), Expect = 3e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| ||||||||||| |||||||| | || || |||||||| || ||||| Sbjct 8272984 CAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 8273043 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||| ||||| ||||| || |||||||| |||| |||| || || || || ||||| Sbjct 8273044 CCCGGCATGAGGCCCCGCTTCTTGAGCCAAAAGATGG-CGCAGAAGGAACCCGAGAAGAA 8273102 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTC 50114 ||| || || || || ||||| || || | ||| Sbjct 8273103 GATCCCCTCGACGCAAGCGAAGGCGACGAGGCGCTC 8273138 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 ||| || ||||| | || | || || | ||| |||| | | ||| |||| ||| || Sbjct 2940661 TCCACCTTGATCAACATAACGGGCCGTATCATTGAAAACACGTAGCATAGGAACAATCCC 2940720 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| || || ||||| || || ||||||||| ||| | || |||||||| || ||| Sbjct 2940721 ATTAGAGGTTCCATTTGTTCCTCGGATATAGCTCCCAGTAGCTCGAATATTGTGAACTGA 2940780 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 || ||| || || || || ||| || | || ||| || || ||||||||||| Sbjct 2940781 TACACCAATGCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAAAGTATCATAGAT 2940840 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||||| ||||| ||||| ||||| | || |||||||| Sbjct 2940841 TCCCTCAATGCTGTCATCTTTCATGCAGATAAGGAAACAGCT 2940882 >seq2 Length=39559433 Score = 86.0 bits (94), Expect = 9e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 ||| || ||||| || | ||| || ||||| || |||||||| | ||||| | | Sbjct 38035400 AGTGCCAGCATTGAAAAGGGTTGGCGAAGCATGAGTAAACCAGCGCTGAGACATCATGTG 38035341 Query 80394 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTA 80452 ||| || | ||||| ||||| ||||| | ||| || || || | | || | ||||| Sbjct 38035340 GTATGTTTTGATAGCAGATTCAATATCATCCTTG-TGTATCCCAATAGAAACTCTCATTA 38035282 Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCA 80512 ||| ||||| |||||||| || | ||| | | ||| |||| |||||| | || | Sbjct 38035281 GCATATGCTGTGGTCTTTCCACAACCTTTCCACCAACTTTTAACAGATAAGATCTCTCAA 38035222 Query 80513 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 || ||||||||||| |||| || ||| |||| || ||||| || Sbjct 38035221 GGGTCTTAAAACCAAAGTAGTCATAGTCAAAATCTCTGTCATAAATTAT 38035173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268692259680