Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2 91.5 2e-13 seq6 89.7 7e-13 >seq2 Length=39559433 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 ||| || ||||| || | ||| || ||||| || |||||||| | ||||| | | Sbjct 38035400 AGTGCCAGCATTGAAAAGGGTTGGCGAAGCATGAGTAAACCAGCGCTGAGACATCATGTG 38035341 Query 72477 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTA 72535 ||| || | ||||| ||||| ||||| | ||| ||||| || | | || | ||||| Sbjct 38035340 GTATGTTTTGATAGCAGATTCAATATCATCCTTG-TGTATCCCAATAGAAACTCTCATTA 38035282 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 ||||||||| |||||||| || | ||| | | ||| |||| || ||| | || | Sbjct 38035281 GCATATGCTGTGGTCTTTCCACAACCTTTCCACCAACTTTTAACAGATAAGATCTCTCAA 38035222 Query 72596 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 || ||||||||||| |||| || ||| |||| || ||||| || Sbjct 38035221 GGGTCTTAAAACCAAAGTAGTCATAGTCAAAATCTCTGTCATAAATTAT 38035173 >seq6 Length=34615992 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 ||| || ||||| | || | || || | ||| |||| | | ||| |||| ||| || Sbjct 2940661 TCCACCTTGATCAACATAACGGGCCGTATCATTGAAAACACGTAGCATAGGAACAATCCC 2940720 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||| || | ||||| || || ||||||||| ||| | || ||||||||| || ||| Sbjct 2940721 ATTAGAGGTTCCATTTGTTCCTCGGATATAGCTCCCAGTAGCTCGAATATTGTGAACTGA 2940780 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 || ||| || || || || ||| || | || ||| || || ||||||||||| Sbjct 2940781 TACACCAATGCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAAAGTATCATAGAT 2940840 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 72398 ||||| || || ||||| ||||| | || |||||||| Sbjct 2940841 TCCCTCAATGCTGTCATCTTTCATGCAGATAAGGAAACAGCT 2940882 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| ||||||||||| ||||| || | || | |||||||| || ||||| Sbjct 8272984 CAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 8273043 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAA 42183 || ||||| ||||| ||||| || |||||||| || | |||| || || || || ||||| Sbjct 8273044 CCCGGCATGAGGCCCCGCTTCTTGAGCCAAAAGAT-GGCGCAGAAGGAACCCGAGAAGAA 8273102 Query 42184 GATTCCTTCTAC 42195 ||| || || || Sbjct 8273103 GATCCCCTCGAC 8273114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671139099329120