Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq6 165 1e-35 >seq6 Length=34615992 Score = 165 bits (182), Expect = 1e-35 Identities = 578/884 (65%), Gaps = 30/884 (3%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| |||||| | || | | || ||||| | ||||| ||||| ||| || || | Sbjct 8273560 TGTTCCCCATCCGTTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGTTCT 8273501 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGA-GACTCGTTTGACT 125114 |||||| || |||||||| || ||| ||| | | | ||||| | | || | | Sbjct 8273500 GGACGGCGGAGGAGGTCGACCTCTCCGCCGACGCGCGCCACTGGGACGCCGCGCTCTCCC 8273441 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || ||||| | || || || ||| | | |||||||| || | |||||| || ||| Sbjct 8273440 CCGAC-GAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCTGCCTCCGACGGCATC 8273382 Query 125175 GTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCGTG 125233 || ||| || || | | ||| | || || || | | |||| || | Sbjct 8273381 GTGCTCGAGAACCTCGCCTCCAGGTTCATGTCC-GACGTGCAGGTCGCCGAGGCA-CGCG 8273324 Query 125234 CTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 | || ||||||||||| ||| || |||||| | ||||| || |||||||| ||| Sbjct 8273323 CCTTCTACGGATTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTGCTGC 8273264 Query 125293 TTGACATGTACATTCGCGATC-CGCAACGTAAACACATGCTCTTTAACGCAATCGACACG 125351 | || | ||||| ||||| ||| | || || ||||| ||| |||||||| Sbjct 8273263 TCGAGACCTACATCCGCGACGACGCCGAG-AAGGACCGCCTCTTCCGCGCCATCGACACC 8273205 Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT-C 125410 || || | | || |||||| |||||| || || |||||||| | || | || | Sbjct 8273204 GTCCCCGCCGTCCGCCGCAAGGCTGAATGGGCCATGCGCTGGATCGACGGCGGCGAGCGC 8273145 Query 125411 TTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG 125470 |||| |||| | || || || ||||| ||| ||||| |||||||| |||||| Sbjct 8273144 TTCG----CCGAGCGCCTCGTCGCCTTCGCTTGCGTCGAGGGGATCTTCTTCTCGGGTTC 8273089 Query 125471 TTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTA 125529 || |||| |||||||||||||||||||||| || |||||||| || || || | | Sbjct 8273088 CTTCTGCG-CCATCTTTTGGCTCAAGAAGCGGGGCCTCATGCCGGGCCTCACCTTCTCCA 8273030 Query 125530 ACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCA 125589 ||||| | || || || ||||||||||| ||||| ||||| ||| || || | Sbjct 8273029 ACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTAT------ 8272976 Query 125590 ACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATG 125649 || | || | ||| | || || | ||| | ||| | | || || |||| | Sbjct 8272975 ACGAACTCC--TCCGCGGCAAGCTCGA-CGAGGCCCGTGTCCGCGAGATCGTCGCCGACG 8272919 Query 125650 CCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGA 125709 |||| || || ||||| | ||| | || || ||| | | ||||||| Sbjct 8272918 CCGTCGACATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGCATGA 8272859 Query 125710 ACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGA 125769 || || | || ||| || ||||||| ||||| || || || || || || | | | Sbjct 8272858 ACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCT---CATGGCGC 8272802 Query 125770 TTGGCCGC---AAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCAC 125826 | ||| || ||||| ||||||| | || || || || | ||| ||| || | Sbjct 8272801 TCGGCTGCAAGAAGATGTACAACGTCGCCAACCCTTTCGACTGGATGGAGCTCATCTCCC 8272742 Query 125827 TAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 | |||| ||||||||||| ||||||||| ||| |||| ||| Sbjct 8272741 TGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTAC 8272698 Score = 156 bits (172), Expect = 6e-33 Identities = 245/344 (71%), Gaps = 15/344 (4%) Strand=Plus/Plus Query 125235 TTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATT 125294 || || |||||||| ||| || |||||| | |||||||| |||||||| ||| | Sbjct 933546 TTCTATGGATTCCAGATCGCCATCGAGAACATCCACTCGGAGATGTACTCGCTGCTGCTC 933605 Query 125295 GACATGTACATTCGCGATCCGCAACGTAAACAC--ATG--CTCTTTAACGCAATCGACAC 125350 || | ||||| ||||| | |||| | | || ||||| ||| |||||||| Sbjct 933606 GAGACCTACATCCGCGA----CGACGTCGAGAAGGATCGCCTCTTCCGCGCCATCGACAC 933661 Query 125351 GGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT- 125409 || || | | || |||||| | |||| || ||||||||||| | || | || Sbjct 933662 CGTCCCCGCCGTGCGCCGCAAGGCTGACTGGGCCATGCGGTGGATCGACGGCGGCGAGCG 933721 Query 125410 CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-T 125468 ||||| |||| | || ||||| |||||| ||| ||||| |||||||| ||||| | Sbjct 933722 CTTCG----CCGAGCGCCTCGTGGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCT 933777 Query 125469 AGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 || |||| ||||||| |||||||||||||| ||||||||||| || || || | Sbjct 933778 CATTCTGCG-CCATCTTCTGGCTCAAGAAGCGGGGACTCATGCCGGGCCTCACCTTCTCC 933836 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 |||||| | || || || |||||||| || ||||| ||||| || Sbjct 933837 AACGAGCTCATCTCCCGCGACGAGGGTCTCCACTGCGACTTCGC 933880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741059088841120