Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2 145 2e-29 seq5 127 5e-24 seq6 125 2e-23 seq4 122 2e-22 >seq2 Length=39559433 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || ||||| || ||||| |||||||||| || || | || || Sbjct 31556617 AAGAACAAGGTGGAGGGTGGATTCCTTTTGAATGTTATAGTCAGCGAGTGTCCGGCCATC 31556676 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 |||||||| || |||||||| || ||||||||||| || || || || || || || || Sbjct 31556677 CTCTAGTTGCTTGCCAGCAAAGATGAGCCTCTGTTGGTCTGGGGGGATACCCTCCTTGTC 31556736 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| ||||| ||||| ||||| || | ||| ||| | ||||| || || || ||||| Sbjct 31556737 CTGGATCTTGGCTTTAACATTGTCAATGGTGTCGGAACTCTCTACATCAAGAGTGATAGT 31556796 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| | || || ||||| |||||||| Sbjct 31556797 CTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 31556829 Score = 129 bits (142), Expect = 1e-24 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || ||||| ||||| || || ||||| | | || | || || Sbjct 31555934 AGGACAAGATGAAGAGTGGATTCCTTCTGGATGTTGTAGTCTGCCAAGGTACGCCCATCC 31555993 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 ||||| || || |||||||| || ||||||||||| || || || || || || || ||| Sbjct 31555994 TCTAGCTGCTTCCCAGCAAAGATGAGCCTCTGTTGGTCTGGTGGGATGCCCTCCTTGTCC 31556053 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGT 104526 || ||||| || || ||||| || | |||||| || | || || || ||||| ||||| Sbjct 31556054 TGGATCTTGGCCTTAACATTGTCGATGGTATC-AGAGCTCTCGACTTCAAGTGTGATAGT 31556112 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| || || || ||||| |||||||| Sbjct 31556113 CTTTCCAGTTAGGGTCTTGACAAAGATCTGCAT 31556145 Score = 129 bits (142), Expect = 1e-24 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| || || ||||||| | || | || || ||||| || |||||| Sbjct 31556405 GTAGACTCCTTCTGGATGTTGTAGTCAGCCAATGTGCGTCCATCCTCTAGCTGCTTTCCA 31556464 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| |||||||| || || || || || ||||| ||||| || || Sbjct 31556465 GCAAAGATAAGCCTCTGCTGATCAGGTGGGATACCCTCCTTGTCCTGGATCTTGGCCTTG 31556524 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | ||||| || | || ||||| | ||| || ||||| || ||||| || Sbjct 31556525 ACATTGTCAATTGTATC-AGAGCTCTCAACCTCAACTGTGATCGTCTTTCCTGTAAGGGT 31556583 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 31556584 CTTCACAAAGATCTGCAT 31556601 >seq5 Length=31082981 Score = 127 bits (140), Expect = 5e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || ||||| || || || || | || || || |||||||| || || ||| Sbjct 9801364 ATGCCACCCCTGAGCCTTAGCACGAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAATCA 9801423 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | ||||| | ||||| || || || || || || || || || | ||| || || ||| Sbjct 9801424 GCCAGAGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGA 9801483 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||||||||| || || ||||| || | |||||| || || Sbjct 9801484 GGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTGTCGATTGTATCGGAAGACTCG 9801543 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||| ||||| || || || || || || || |||||||| Sbjct 9801544 ACCTCAAGCGTAATGGTCTTGCCGGTCAGGGTCTTGACGAAAATCTGCAT 9801593 Score = 127 bits (140), Expect = 5e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || || || | ||| || || || | || || ||||||||||| || || || Sbjct 9801820 ATTCCTCCCCTGAGGCGAAGGACAAGGTGGAGGGTGGACTCTTTCTGAATGTTGTAATCT 9801879 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | || || || ||||| || || ||||| || || | |||||| ||||| Sbjct 9801880 GCAAGGGTGCGGCCATCCTCGAGTTGCTTGCCCGCAAAGATGAGGCGCTGTTGGTCAGGT 9801939 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||||||||| || || || || || | ||||| | || Sbjct 9801940 GGAATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTATCTGAGGACTCA 9801999 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| ||||| || ||||| |||||||| Sbjct 9802000 ACCTCGAGGGTTATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 9802049 Score = 114 bits (126), Expect = 3e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || |||||||| || || |||| || || ||||||||||| || ||||| Sbjct 9801592 ATGCCTCCCCTCAGCCTAAGCACAAGGTGTAGAGTGGACTCTTTCTGAATGTTGTAGTCT 9801651 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | | || | ||| || || || || || ||||| || || || | ||||||||| || Sbjct 9801652 GCCAAGGTCCGACCATCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGTTGATCTGGG 9801711 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||| |||||||| || || || || | || || | || Sbjct 9801712 GGGATACCCTCCTTGTCCTGGATCTTTGCCTTCACGTTGTCGATCGTGTCTGAGGACTCA 9801771 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| | || || ||||| || || | || || ||||| ||||||||| Sbjct 9801772 ACCTCCAAAGTGATGGTCTTTCCTGTCAAGGTCTTCACAAAGATCTGCATT 9801822 Score = 109 bits (120), Expect = 1e-18 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| || || ||||| | || || | || || || || || || ||| Sbjct 26220103 GTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCCTCCAGCTGCTTACCA 26220044 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || ||||| || || || || || || || |||||||| ||||| || || Sbjct 26220043 GCGAAGATGAGTCTCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGGATCTTCGCCTTC 26219984 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| || || | || ||||| || ||||||||||| ||||| || || Sbjct 26219983 ACGTTGTCGATGGTGTCTG-AGCTCTCAACCTCCAGGGTAATAGTCTTGCCAGTGAGAGT 26219925 Query 104542 TTTTACAAATATCTGCATT 104560 || || || ||||||||| Sbjct 26219924 CTTGACGAAAATCTGCATT 26219906 Score = 96.9 bits (106), Expect = 8e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || || || || || ||||| |||||||| || || || | || || | || || Sbjct 9800935 AGCACCAGGTGCAAAGTGGATTCCTTCTGAATGTTGTAATCTGCTAAGGTGCGGCCATCC 9800994 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || |||||||| || || | ||| ||||| || || || ||||| || ||| Sbjct 9800995 TCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCCGGGGGAATGCCTTCCTTGTCC 9801054 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||||||||| || || || | || || | || ||||| || ||||| || Sbjct 9801055 TGAATCTTTGCTTTCACGTTGTCAATCGTGTCTGACGACTCAACCTCCAGGGTAATGGTT 9801114 Query 104528 TTACCAGT 104535 || || || Sbjct 9801115 TTGCCGGT 9801122 >seq6 Length=34615992 Score = 125 bits (138), Expect = 2e-23 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || || || || || || | || || || |||||||| || || ||| Sbjct 31537756 ATCCCACCCCTAAGTCTGAGCACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCA 31537815 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || |||||||| || || || || || ||||| || || | ||| ||||||||| Sbjct 31537816 GCCAGGGTCCTACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGA 31537875 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG-TTC 104508 || ||||| || || ||||| ||||| || || ||||| || | || || | ||| || Sbjct 31537876 GGGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTGTC-CGAGGACTC 31537934 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| || || | || || ||||| |||||||| Sbjct 31537935 GACCTCAAGAGTGATGGTCTTTCCTGTCAAGGTCTTCACAAAGATCTGCAT 31537985 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | ||| || || || | || || || ||||| || || || || Sbjct 31537984 ATGCCTCCCCTGAGGCGAAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCC 31538043 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | ||| || |||||||| || |||||||| || || | || || ||||| Sbjct 31538044 GCGAGGGTGCGACCATCCTCTAGTTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCAGGT 31538103 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||||||||| || || ||||| || | ||||| | || Sbjct 31538104 GGAATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATTGTATCAGACGACTCA 31538163 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| || |||||||| || ||||| |||||||| Sbjct 31538164 ACCTCGAGGGTGATGGTCTTGCCGGTAAGTGTCTTCACAAAGATCTGCAT 31538213 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || || || || || || || ||||| || || ||||| | || || | || || Sbjct 31537546 AGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGGGTACGGCCATCC 31537605 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || || || || | | ||| || || || || || ||||| || ||| Sbjct 31537606 TCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCC 31537665 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| || || ||||| || | ||||| || || ||||| || ||||| ||| Sbjct 31537666 TGAATCTTCGCCTTCACATTGTCGATCGTATCAGAAGACTCAACCTCAAGCGTAATGGTC 31537725 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || ||||| || ||||| Sbjct 31537726 TTGCCGGTCAGGGTCTTGACAAAGATTTGCAT 31537757 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| || || ||||| || || | ||| | || || ||||||||||| || || |||| Sbjct 30154864 TTCCACCCCTGAGCCTCAGGACCAAATGGAGCGTGGACTCTTTCTGAATGTTGTAATCAG 30154805 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 || || | || ||||| || ||||| || || ||||| ||||| || ||||| || | Sbjct 30154804 CTAATGTACGTCCATCTTCCAGCTGTTTCCCTGCGAAAATCAGCCTTTGCTGATCTGGGG 30154745 Query 104451 GTATTCCTTCTTTATCCTGAA 104471 | || || ||||| ||||||| Sbjct 30154744 GGATACCCTCTTTGTCCTGAA 30154724 >seq4 Length=33711903 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 ||||| || || || || || || ||||| || ||||| || | ||||| | || || Sbjct 30264494 AGTACAAGGTGCAAGGTGGACTCCTTCTGGATGTTATAATCCGCAAGAGTACGCCCATCC 30264435 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || ||||| || || || | ||| || || ||||| || || || || ||| Sbjct 30264434 TCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCC 30264375 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| || || ||||| || | |||||| | || ||||| | || || ||| Sbjct 30264374 TGAATCTTAGCCTTCACATTGTCAATCGTATCGGAGGACTCAACCTCCAAGGTGATGGTC 30264315 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || |||||||||||||| Sbjct 30264314 TTGCCAGTGAGGGTCTTAACAAATATCTGCAT 30264283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398222972496