Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq3 118 9e-22 >seq3 Length=38925377 Score = 118 bits (130), Expect = 9e-22 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 5503 GCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTC 5562 ||| ||||| ||||| || || | || || || |||| ||| | ||||||| | Sbjct 28684772 GCCGGTGGATCCGAACCCTCCCTCTCCCCTGAGGGTGGCGTCGAGGTCCTCCACCTCGGC 28684831 Query 5563 CACATCGGGGAACGC-AGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTA 5621 || || || | | | | | |||| ||||| |||||| || |||||||| | ||| | Sbjct 28684832 GACCTCCGGCGTCACGATCAC-CTCGATGATCATCTGCGCGATCCGGTCGCCAGGCTTCA 28684890 Query 5622 CCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGG 5681 | |||| ||| ||| | | |||||| || | || ||||| ||| |||||||||| Sbjct 28684891 CGGCGAAGTCGGTGTCGGAGTGGTTGAAGAGGATGACCCCCACCGGGCCACGGTAGTCGG 28684950 Query 5682 CGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGA 5733 |||| ||||| || |||||||||||||| ||||||| | |||||| ||||| Sbjct 28684951 CGTCGATCACCCCGGCGCCCACGTCGATCGAGTGCTTCAGCGCCAGCCCGGA 28685002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430054337104544