Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq5 118 9e-22 seq2 95.1 1e-14 seq1 93.3 4e-14 seq6 87.8 2e-12 >seq5 Length=31082981 Score = 118 bits (130), Expect = 9e-22 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 48511 CCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCT 48569 ||||| ||| | || || ||| |||||| ||||||||||||||||||| | || || Sbjct 9801378 CCTTAGCACGAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAATCAGCCAGAGTG-CGTC 9801436 Query 48570 CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCT 48629 ||||||| |||||||| ||| || | || | |||||||| ||| || | | |||| Sbjct 9801437 CGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCT 9801496 Query 48630 TGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTA 48689 ||||| ||| ||| ||| | | | || ||||||| |||||| ||| | || | Sbjct 9801497 TGTCCTGAATCTTCGCCTTCACATTGTCGATTGTATCGGAAGACTCGACCTCAAGCGTAA 9801556 Query 48690 TGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||| || ||||| || || || || ||||||||||| Sbjct 9801557 TGGTCTTGCCGGTCAGGGTCTTGACGAAAATCTGCAT 9801593 Score = 82.4 bits (90), Expect = 6e-11 Identities = 150/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 48511 CCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTC 48570 ||| | ||||| ||||| || |||||| || || ||||| ||||||| || | Sbjct 9801150 CCTGAGCACTAGGTGAAGGGTTGACTCCTTCTGGATATTGTAGTCAGCCAGGGTGCGTCC 9801209 Query 48571 GTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTT 48630 |||||| |||||||| ||| || | || | |||||||| || || | | |||||| Sbjct 9801210 GTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGTGGAATGCCTTCCTT 9801269 Query 48631 GTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTT 48688 |||| || ||| ||| | | | || || || || | ||||| ||| | ||| Sbjct 9801270 GTCCTGGATCTTCGCCTTCACGTTGTCG--ATTGTGTCTGATGACTCGACCTCTAATGTG 9801327 Query 48689 ATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || || | || || |||||||||||||| Sbjct 9801328 ATGGTCTTGCCAGTTAAGGTCTTGACAAAAATCTGCAT 9801365 Score = 82.4 bits (90), Expect = 6e-11 Identities = 145/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 || || ||| ||| || |||||||||||||| | ||| || || | ||||| || || Sbjct 9801847 TGGAGGGTGGACTCTTTCTGAATGTTGTAATCTG-CAAGGGTGCGGCCATCCTCGAGTTG 9801905 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || | ||||| || || || | || ||||||||| ||| || Sbjct 9801906 CTTGCCCGCAAAGATGAGGCGCTGTTGGTCAGGTGGAATACCCTCCTTGTCCTGAATCTT 9801965 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 ||||| | | || || ||||| | ||||| ||||| |||||||| || || Sbjct 9801966 GGCCTTGACGTTGTCG--ATCGTATCTGAGGACTCAACCTCGAGGGTTATGGTCTTGCCA 9802023 Query 48701 GTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||| || |||||||| ||||||||| Sbjct 9802024 GTGAGTGTCTTCACAAAGATCTGCATC 9802050 >seq2 Length=39559433 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCCTCCAGCT 48581 || || ||| |||||| || |||||||| ||||| || ||| || | |||||||||| Sbjct 2779388 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC-AAGGGTC-CTGCCATCCTCCAGCT 2779445 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||| ||| || | || | ||||||||| ||| || | | ||||||||| || | Sbjct 2779446 GCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCT 2779505 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 | ||||| | |||||||| | ||||||| ||| | || || || || |||| Sbjct 2779506 TGGCCTTGACGTTGTCAATGGTATCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCCGG 2779565 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | | || |||||||| |||||||| Sbjct 2779566 TCAATGTCTTCACAAAGATCTGCAT 2779590 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || |||||||| || |||||| |||||||||||||| |||||| ||| | |||||| Sbjct 31556165 ACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGCCAATGTGCGCCCATCCTCC 31556224 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 || ||||| || | | || | | |||||| || || | | ||||||||| Sbjct 31556225 AGTTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGG 31556284 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 ||||| ||||| | | ||||| || | |||| || | |||||||| || Sbjct 31556285 ATTTTTGCCTTGACATTGTCGATGGTGTCAGAGCTCTCCACTTCCAGAGTTATGGTCTTG 31556344 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || || ||||| |||||||| ||||||||| Sbjct 31556345 CCAGTCAGAGTCTTCACAAAGATCTGCATC 31556374 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCCTCCAGCT 48581 || || ||| |||||| || |||||||| ||||| | ||| || | |||||||||| Sbjct 2778932 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGG-GTC-CTGCCATCCTCCAGCT 2778989 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||| || || | || | ||||||||| ||| || | | ||||||||| || | Sbjct 2778990 GCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCT 2779049 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 | ||||| | |||||||| | |||||| ||||| || ||||| || || | Sbjct 2779050 TAGCCTTGACGTTGTCAATGGTATCAGAAGACTCGACCTCGAGGGTGATGGTCTTGCCAG 2779109 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | ||||| ||||| || |||||||| Sbjct 2779110 TCAGAGTCTTCACGAAGATCTGCAT 2779134 >seq1 Length=46096743 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || || | ||| |||||||||||||| Sbjct 12788236 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCCAGCTGC 12788295 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | |||||||| ||| || | | |||||||||| || ||| Sbjct 12788296 TTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATCCCTTCCTTGTCCTGGATCTTC 12788355 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||| | | | || ||||| || | |||||| ||| | || ||||| || || | Sbjct 12788356 GCCTTCACGTTGTCG--ATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTCCCCG 12788413 Query 48702 TGAGAGTTTTCACAAAAATCTGCATCGTG 48730 | || || ||||| || ||||||||| || Sbjct 12788414 TCAGGGTCTTCACGAAGATCTGCATCTTG 12788442 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || |||| || ||||||||||||||||| ||| || | Sbjct 27626539 CTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGTTCGTCCTCCAGCTGCTTGCCGGCGAA 27626480 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||| ||| ||| | | ||||||||| | ||| ||||| Sbjct 27626479 GATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGCACCTTCGCCTTGACGTT 27626420 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || || ||| | |||| ||||| || ||||| || || || || || ||||| Sbjct 27626419 CTGGATCGTGTCGCTGCTCTCCACCTCGAGCGTGATGGTCTTCCCCGTCAGGGTCTTCAC 27626360 Query 48715 AAAAATCTGCATC 48727 || ||||||||| Sbjct 27626359 GAAGATCTGCATC 27626347 >seq6 Length=34615992 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| || || |||||| |||||| || ||||||||||| || || || || | |||| Sbjct 32010591 CACCAAGTGGAGTGTGGACTCCTTCTGGATGTTGTAATCCGC-AAGGGTACGGCCATCCT 32010533 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | ||||||||||| | | || | ||||||||| ||| || | | ||||||||| Sbjct 32010532 CAAGCTGCTTACCAGCAAATATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCT 32010473 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || ||| ||| | | | || || |||| ||||| ||| | || ||||| | Sbjct 32010472 GGATCTTCGCCTTCACATTGTCAATAGTGTCGGACGACTCAACCTCAAGGGTGATGGTCT 32010413 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 | || || || || || ||||| ||||||||| Sbjct 32010412 TGCCAGTCAGGGTCTTGACAAAGATCTGCATC 32010381 Score = 86.0 bits (94), Expect = 5e-12 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCCTCCAGCT 48581 || || ||| |||||| |||||||||||||||||| | ||| || ||||||| |||| Sbjct 31537783 TGGAGGGTGGACTCCTTCTGAATGTTGTAATCAGCC-AGGGTC-CTACCGTCCTCAAGCT 31537840 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||| ||| | | || | |||||||||||| || | | ||||||||| || | Sbjct 31537841 GCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGAGGGATTCCCTCCTTGTCCTGGATCT 31537900 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 || ||| | | | || || || | ||||| ||| | || ||||| || || | Sbjct 31537901 TCGCCTTCACATTGTCGATCGTGTCCGAGGACTCGACCTCAAGAGTGATGGTCTTTCCTG 31537960 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | | || |||||||| |||||||| Sbjct 31537961 TCAAGGTCTTCACAAAGATCTGCAT 31537985 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| | | ||| | ||| | ||| || ||| ||||| || ||||||||||| || Sbjct 32009925 ACCTCCCCTGAGCCTGAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGC 32009866 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || || || |||||||||||||||| || || | || | ||||||||| || | Sbjct 32009865 -AAGGGTACGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGG 32009807 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | ||||||||| || || ||||| | ||||| || | ||||| Sbjct 32009806 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGACGACTCGA 32009747 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || ||||| || || || || || ||||| || |||||||| Sbjct 32009746 CCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 32009698 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| ||| |||||| || |||||||| ||||| || || || | ||||||||||| Sbjct 32010356 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC-AAGGGTGCGGCCATCCTCCAGCTG 32010298 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || | ||||||||| || || | || ||||||||| || || Sbjct 32010297 CTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGGATCTT 32010238 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | | || || || | |||||| ||| | ||| ||||| || ||||| Sbjct 32010237 GGCCTTCACATTGTCGATCGTGTCCGAAGACTCAACCTCAAGTGTGATGGTCTTGCCGGT 32010178 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 || || || || || |||||||| Sbjct 32010177 CAGGGTCTTGACGAAGATCTGCAT 32010154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421251138392012