Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq5 114 7e-21 seq1 113 2e-20 seq10 109 3e-19 seq9 109 3e-19 seq8 109 3e-19 seq2 109 3e-19 seq4 107 1e-18 seq7 104 1e-17 seq11 100 1e-16 seq3 100 1e-16 >seq5 Length=31082981 Score = 114 bits (126), Expect = 7e-21 Identities = 76/85 (89%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| ||||||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 24955741 AAAAATGAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 24955800 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| |||||||||| |||| Sbjct 24955801 CTCTAACCAGCTGAGCTAATAGGCC 24955825 >seq1 Length=46096743 Score = 113 bits (124), Expect = 2e-20 Identities = 78/89 (88%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||||| || |||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 42168659 AATAAAAAAGAAATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 42168600 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 42168599 GACGCTCTAACCAGCTGAGCTAATAGGCC 42168571 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || |||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 27983211 AATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 27983270 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 27983271 CAGCTGAGCTAATAGGCC 27983288 Score = 102 bits (112), Expect = 4e-17 Identities = 76/89 (85%), Gaps = 3/89 (3%) Strand=Plus/Minus Query 11444 AAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 37409536 AAAAAATAGAATAGGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 37409477 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 37409476 GACGCTCTAACCAGCTGAGCTAATAGGCC 37409448 Score = 102 bits (112), Expect = 4e-17 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 37415046 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 37414987 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 37414986 CTGAGCTAATAGGCC 37414972 >seq10 Length=25992119 Score = 109 bits (120), Expect = 3e-19 Identities = 80/93 (86%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||||| |||| | |||||||||||| | | |||||||| |||||||||||||||| Sbjct 20572580 AATTAAGAAAAGA--AAATTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTA 20572523 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| ||||||||||||||| |||| Sbjct 20572522 GCACGACGCTCTAACCAACTGAGCTAATAGGCC 20572490 >seq9 Length=26294017 Score = 109 bits (120), Expect = 3e-19 Identities = 79/91 (87%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| |||||||||||| | | |||||||| |||| ||||||||||||||||||| Sbjct 21586615 AAAAAATGGAATTGGCCCATGCAGGTCTCGAACCTGCGACATTCGCGTTATTAGCACGAC 21586556 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC-GTCG 11533 ||||| |||| |||||||||| |||| |||| Sbjct 21586555 GCTCTAACCAGCTGAGCTAATAGGCCAGTCG 21586525 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 17209703 AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 17209762 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 17209763 CAGCTGAGCTAATAGGCC 17209780 >seq8 Length=29853973 Score = 109 bits (120), Expect = 3e-19 Identities = 82/97 (85%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 11433 ATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTT 11492 ||| || || |||||| | | |||||||||| | | |||||||| ||||||||||||| Sbjct 25367536 ATAAAAGTAGTAAAAATTTATTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTT 25367477 Query 11493 ATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||| |||| |||||||||| |||| Sbjct 25367476 ATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 25367440 Score = 102 bits (112), Expect = 4e-17 Identities = 75/87 (86%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||| | ||| ||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 20777730 AAAAAGTTTAATATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 20777789 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||| |||||||||| |||| Sbjct 20777790 CGCTCTAACCAGCTGAGCTAATAGGCC 20777816 >seq2 Length=39559433 Score = 109 bits (120), Expect = 3e-19 Identities = 85/101 (84%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 11431 ATATAGAATTAATAAAAAATCAAA--TTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||||| | ||||| ||||| ||| |||||||||| | | ||||||| ||||||||| Sbjct 24815490 ATATATGAATAATAGAAAATAAAAAATTGGCCCATGCAGGTCTCGAACCGGCGACCTTCG 24815431 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| |||| |||||||||| |||| Sbjct 24815430 CGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 24815390 >seq4 Length=33711903 Score = 107 bits (118), Expect = 1e-18 Identities = 77/89 (87%), Gaps = 3/89 (3%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||||| ||||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 21170319 AAGAAAAAAT---ATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 21170263 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 21170262 GACGCTCTAACCAGCTGAGCTAATAGGCC 21170234 Score = 105 bits (116), Expect = 3e-18 Identities = 85/102 (83%), Gaps = 1/102 (1%) Strand=Plus/Plus Query 11430 AATATAGAATTAATAAAA-AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 |||| | ||| || ||| || ||| ||||||||| | | |||||||| ||||||||| Sbjct 23455790 AATAAAAAATAAAAAAAGGAAAAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCG 23455849 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||||||||||| |||| |||||||||| ||||| Sbjct 23455850 CGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCCG 23455891 Score = 105 bits (116), Expect = 3e-18 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 23626906 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 23626847 Query 11515 CTGAGCTAATGGGCCGT 11531 |||||||||| |||||| Sbjct 23626846 CTGAGCTAATAGGCCGT 23626830 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 22844846 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 22844905 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 22844906 TGAGCTAATAGGCC 22844919 >seq7 Length=31244610 Score = 104 bits (114), Expect = 1e-17 Identities = 76/89 (85%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||| ||| | | ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 28010820 AAAAAATAATAAGAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 28010761 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 28010760 GACGCTCTAACCAGCTGAGCTAATAGGCC 28010732 >seq11 Length=28494620 Score = 100 bits (110), Expect = 1e-16 Identities = 76/89 (85%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||| ||| |||||||| | | |||||||| ||||||||||||||||||||| Sbjct 373360 AATAAAAAGAGGAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 373302 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 373301 GACGCTCTAACCAGCTGAGCTAATAGGCC 373273 >seq3 Length=38925377 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 15832826 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 15832885 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 15832886 TGAGCTAATAGGCC 15832899 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261491161756912