Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3 141 1e-29 seq4 132 8e-27 seq5 125 1e-24 seq9 118 2e-22 seq7 118 2e-22 seq2 116 6e-22 seq10 111 2e-20 >seq3 Length=38925377 Score = 141 bits (156), Expect = 1e-29 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || |||||| | | ||| Sbjct 992134 CTGCGCGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGCGGCTGGCTAGGAGGGGT 992193 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| |||| || || |||| || |||| || | || | ||||||||| Sbjct 992194 GGCGTGAAGCGTATCTCCGGGCTGATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 992253 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| || |||||||| |||||||| ||| Sbjct 992254 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACTGAGCACGCCCGCCGTAAGACCGTC 992313 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| || | || || || ||||| Sbjct 992314 ACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCG 992354 >seq4 Length=33711903 Score = 132 bits (146), Expect = 8e-27 Identities = 175/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 27742323 CGCTAAGCGCCACCGCAAGGTGCTCCGCGACAACATCCAGGGGATCACCAAGCCGGCGAT 27742264 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | ||||| | | || || || ||||| |||| || | |||| || |||| Sbjct 27742263 CCGGAGGCTGGCGAGGAGGGGCGGCGTGAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 27742204 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || ||| || ||| ||||| Sbjct 27742203 CCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCTGTCACCTACACCGA 27742144 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| ||||||| ||||||| || | || || || || Sbjct 27742143 GCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGG 27742084 Query 16672 CCG 16674 ||| Sbjct 27742083 CCG 27742081 >seq5 Length=31082981 Score = 125 bits (138), Expect = 1e-24 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| | ||||| | | || Sbjct 24075991 CTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGAGGCTGGCGAGGAGGGGC 24075932 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || || |||| || |||| || | || | ||||||||| Sbjct 24075931 GGCGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 24075872 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| ||||| ||||| |||||||| ||| Sbjct 24075871 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAACACGCACGCCGTAAGACCGTC 24075812 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| ||||||| ||||||| || | || || || ||||| | | || ||||| || Sbjct 24075811 ACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCGCACCCTCTACGGTTTCGG 24075753 Score = 122 bits (134), Expect = 1e-23 Identities = 172/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | || || || |||||||| || ||||||||||| || ||| Sbjct 24214662 GCCAAGCGTCACCGGAAGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGATC 24214721 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || | ||||| | | || || || ||||| |||| || || |||| || |||| Sbjct 24214722 CGGAGGCTGGCGAGGAGGGGCGGCGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGACC 24214781 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | |||||||||||| ||| ||| |||| || || || ||| || ||| Sbjct 24214782 CGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACTGAG 24214841 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || ||||| |||||| ||||||| ||||||| || | || || || ||| Sbjct 24214842 CACGCACGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGC 24214901 Query 16673 CG 16674 || Sbjct 24214902 CG 24214903 Score = 109 bits (120), Expect = 9e-20 Identities = 152/212 (72%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 16464 ACATCCAAGGAATCACCAA-GCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAG 16522 |||||||||| ||||||| ||| || ||||| | || || | || || || ||| Sbjct 24081732 ACATCCAAGGCGTCACCAAAGCCGGCGATCCGATGCCTTGCGAGGAAGGGCGGCGTGAAG 24081673 Query 16523 CGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACC 16582 || |||| || || |||| | |||| || || || | ||||||||||||||| Sbjct 24081672 CGCATCTCAGGGTTCATCTACAAGGAGACTCATGGCGTGCTCGAGATCTTCCTCAAGAAT 24081613 Query 16583 GTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATG 16642 ||||||| ||||| | ||| |||||||| ||| | || ||||| ||||| ||||| Sbjct 24081612 GTTATCCGCGATGCCGTTACCTACACCGAGCATGCTCACCGCAAGACCGTCACAGCCATG 24081553 Query 16643 GATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| || | || | ||| ||||| Sbjct 24081552 GATGTCGTCTACGCTCTCAAGCTTCAGGGCCG 24081521 >seq9 Length=26294017 Score = 118 bits (130), Expect = 2e-22 Identities = 172/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | || || || |||||||| || ||||| ||||| || || Sbjct 18761848 CGCGAAGCGTCACCGGAAGGTGCTCCGCGACAACATCCAGGGGATCACGAAGCCGGCGAT 18761907 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | ||||| | | || || || ||||| |||| || | |||| || |||| Sbjct 18761908 CCGGAGGCTGGCCAGGAGGGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 18761967 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || || || ||| ||||| Sbjct 18761968 CCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 18762027 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| ||||||| ||||||| || | || || || || Sbjct 18762028 GCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGG 18762087 Query 16672 CCG 16674 ||| Sbjct 18762088 CCG 18762090 Score = 114 bits (126), Expect = 2e-21 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| || ||||| | ||||| | | || Sbjct 25293992 CTGCGCGACAACATCCAGGGGATCACGAAGCCGGCGATCCGGAGGCTGGCGAGGAGGGGC 25293933 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || || |||| || |||| || | || | ||||||||| Sbjct 25293932 GGCGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGACGCGCGGCGTGCTCAAGATCTTC 25293873 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| || |||||||| || ||||| ||| Sbjct 25293872 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACGGAGCACGCCCGCCGCAAGACCGTC 25293813 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| || | || || || ||||| Sbjct 25293812 ACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCG 25293772 >seq7 Length=31244610 Score = 118 bits (130), Expect = 2e-22 Identities = 172/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | || || || |||||||| || ||||| ||||| || || Sbjct 23508831 CGCGAAGCGTCACCGGAAGGTGCTCCGCGACAACATCCAGGGGATCACGAAGCCGGCGAT 23508890 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | ||||| | | || || || ||||| |||| || | |||| || |||| Sbjct 23508891 CCGGAGGCTGGCGAGGAGGGGCGGTGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 23508950 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || || || ||| ||||| Sbjct 23508951 CCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 23509010 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| ||||||| ||||||| || | || || || || Sbjct 23509011 GCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGG 23509070 Query 16672 CCG 16674 ||| Sbjct 23509071 CCG 23509073 >seq2 Length=39559433 Score = 116 bits (128), Expect = 6e-22 Identities = 171/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| || || || |||||||| || ||||| ||||| || ||| Sbjct 30854989 GCGAAGCGCCACCGCAAGGTGCTCCGCGACAACATCCAGGGGATCACAAAGCCCGCGATC 30854930 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || | || || | | || ||||||||||| |||| || | |||| || |||| Sbjct 30854929 CGGAGGCTTGCGAGGAGGGGAGGAGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGACC 30854870 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | |||||||||||| ||| ||| |||| || || || ||| || ||| Sbjct 30854869 CGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACGGAG 30854810 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || ||||| |||||| ||||||| ||||||| || | || || || ||| Sbjct 30854809 CACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGC 30854750 Query 16673 CG 16674 || Sbjct 30854749 CG 30854748 >seq10 Length=25992119 Score = 111 bits (122), Expect = 2e-20 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| || ||||| | ||||| | | || Sbjct 23891022 CTGCGCGACAACATCCAGGGGATCACGAAGCCGGCGATCCGGAGGCTGGCGAGGAGGGGC 23890963 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| || | || | ||||||||| Sbjct 23890962 GGCGTGAAGCGCATCTCCGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 23890903 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| || |||||||| || ||||| ||| Sbjct 23890902 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACGGAGCACGCCCGCCGCAAGACCGTC 23890843 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| || | || || || ||||| Sbjct 23890842 ACCGCCATGGACGTCGTCTACGCTCTCAAGCGCCAGGGCCG 23890802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075189028316