Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq1 569 3e-157 seq7 313 3e-80 seq12 185 1e-41 seq9 129 7e-25 >seq1 Length=46096743 Score = 569 bits (630), Expect = 3e-157 Identities = 738/1009 (73%), Gaps = 13/1009 (1%) Strand=Plus/Minus Query 137875 TGGATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCTGGACTACTACTTT 137934 |||| |||||| ||| | |||| || ||||| ||| | || |||||||| ||| | |||| Sbjct 45923508 TGGACGACTGG-TTAGAAGAGACCGTTTTGTTTTT-TAGGATGGTCTGGCCTATTGCTTT 45923451 Query 137935 TTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAGCT 137994 |||| ||||||||| || | || || ||| |||| || ||||| ||||| || | Sbjct 45923450 TTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTT 45923391 Query 137995 GGTACACCCACGGGTTGGCGTCTAGTTATCTTGAAGGCGCTAATTTCCTCACAGCAGCTG 138054 |||| ||||| || |||||| | ||| | ||||| |||||| | || || || | Sbjct 45923390 GGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTAACCGCGGCAG 45923331 Query 138055 TTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 138114 |||| || ||||| || | | | || ||| | | ||||| ||||| || || | | Sbjct 45923330 TTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCGGAAGCAC 45923271 Query 138115 AAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACG 138174 |||| ||| | || |||| ||| | || || || ||||||||||| || ||||| | Sbjct 45923270 AAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCATG 45923211 Query 138175 GGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTCTCG-TCTGGTAGGC 138233 |||| ||| || || || |||||| | || || ||||| | |||| |||| | | Sbjct 45923210 GGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTGTT---C 45923154 Query 138234 A--TCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTGT 138291 | | || || || || ||||| |||||||||| || |||||||| || || | | | Sbjct 45923153 AATTGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTCCTTAT 45923094 Query 138292 TCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAG 138351 ||||||| ||||| |||| |||||| ||||||||||| | || ||||| || |||| Sbjct 45923093 TCCTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTTCGCCGAGTTTTGGCGTAGCAG 45923034 Query 138352 CAATCTTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTTC 138411 | || || |||||| | | ||| | || || || ||||| ||||| | ||||| |||| Sbjct 45923033 CGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTC 45922974 Query 138412 ATATGATGGGCGTAGC-AG-GTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTGC 138469 |||||||||| || || || ||||| |||| |||||||| || ||||||||||| || Sbjct 45922973 ATATGATGGGAGTTGCCAGAGTATTA--GGTGCGGCTCTGCTATGCGCTATTCATGGGGC 45922916 Query 138470 TACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTGA 138529 || || ||||| ||| | | ||| || || || ||||||| || || ||| | Sbjct 45922915 AACTGTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGCGCTTTTAA 45922856 Query 138530 ACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAAT 138589 || ||||||| |||||||| ||||||||||| || | ||| || | ||||| ||||| Sbjct 45922855 CCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGTTAATCGCTTTTGGTCCCAAAT 45922796 Query 138590 CTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCCGT 138649 |||||| |||||||| ||||| |||||| | || ||||||||||| ||||| || || Sbjct 45922795 CTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCGGT 45922736 Query 138650 CATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAGCGTA 138709 || ||| | |||| ||| |||||| | | || || ||||| |||||||| || || Sbjct 45922735 CACCGGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTAAACCTACGTGCCTA 45922676 Query 138710 TGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAG-ACCTTCTACA 138768 ||| ||||| || || ||||| |||||||| ||||||||||||| ||| || ||||||| Sbjct 45922675 TGACTTCGTTTCCCAGGAAATCCGTGCAGCGAAAGATCCTGAATTTGAGTACTTTCTACA 45922616 Query 138769 CCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATCAACCTC 138828 |||| || |||||| | || || ||| | ||||| |||||||| || |||||| |||| Sbjct 45922615 CCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTC 45922556 Query 138829 ACGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 138877 | ||||| || | || ||||| || || | ||| | || |||||||| Sbjct 45922555 ATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 45922507 Score = 378 bits (418), Expect = 9e-100 Identities = 387/506 (76%), Gaps = 6/506 (1%) Strand=Plus/Minus Query 138372 TTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTTCATATGATGGGCGTAGCAGGT 138431 ||| | || || || ||||| ||||| | ||||| |||||||||||||| || || || Sbjct 13891746 TTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGA 13891687 Query 138432 ATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTGCTACAGTAGAAAATACTTTGTAT 138491 | | || | |||||||| || ||||| ||||| ||||| |||||||| ||| | | Sbjct 13891686 GTATTAGGCGCAGCTCTGCTATGCGCTATCCATGGGGCTACCGTAGAAAACACTCTATTC 13891627 Query 138492 GAAGATGGCGAACAATCAAATACTTTTAAAGCATTTGAACCTACTCAAGAAGAAGAAACC 138551 |||||||| || ||||||| || || ||| | || ||||||| |||||||| Sbjct 13891626 GAAGATGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCCAACTCAAGCTGAAGAAACT 13891567 Query 138552 TATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAATCTTTGGAATTGCTTTTAGTAAT 138611 ||||||||||| ||||||||||| | ||||| ||||||||||| |||||||| ||| Sbjct 13891566 TATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAAT 13891507 Query 138612 AAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACTAGTAGT 138671 || |||||| | || ||||||||||| ||||| ||||||| ||| | |||| ||| | Sbjct 13891506 AAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGTGCT 13891447 Query 138672 ATTGGTATTATTGGTCTTGCTCTTAACCTACGAGCGTATGATTTCGTATCGCAAGAAATT 138731 ||||| | |||| || ||||| |||||||| || ||||| ||||| || || ||||| Sbjct 13891446 ATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATC 13891387 Query 138732 CGTGCAGCAGAAGATCCTGAATTCGAGACCTTCTACACCAAGAACATTCTTCTGAATGAA 138791 |||||||| |||||||||||||| ||||| ||||||||||| || |||||| | || || Sbjct 13891386 CGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAG 13891327 Query 138792 GGTCTGCGTGCCTGGATGGCTCCTGTGGATCAACCTCACGAAAACTTTGTTTTTCCTGAA 138851 ||| | ||||| |||||||| || |||||| ||||| ||||| || | || ||||| Sbjct 13891326 GGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAG 13891267 Query 138852 GAAGTATTGCCAAGAGGCAACGCTCT 138877 || |||| | ||||||||||| Sbjct 13891266 GA------GCCACGTGGCAACGCTCT 13891247 Score = 212 bits (234), Expect = 8e-50 Identities = 236/315 (75%), Gaps = 0/315 (0%) Strand=Plus/Minus Query 138291 TTCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCA 138350 || ||||| ||||| |||| |||||| ||||||||||||| || ||||| || ||| Sbjct 15262756 TTACTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTGCACCGAGTTTTGGCGTAGCA 15262697 Query 138351 GCAATCTTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTT 138410 || || || |||||| | | ||| | || || || ||||| ||||| | ||||| ||| Sbjct 15262696 GCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTT 15262637 Query 138411 CATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTGCT 138470 ||||||||||| || || || | | || | |||||||| || ||||||||||| || Sbjct 15262636 CATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCA 15262577 Query 138471 ACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTGAA 138530 || || ||||| ||| | | ||| ||||| || ||||||| || || ||| | Sbjct 15262576 ACCGTTGAAAACACTCTATTTGAGGATGGTGATGGTGCAAATACCTTCCGCGCTTTTAAC 15262517 Query 138531 CCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAATC 138590 || ||||||| |||||||| ||||||||||| || ||||| || | ||||| |||||| Sbjct 15262516 CCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAATCGCTTTTGGTCCCAAATC 15262457 Query 138591 TTTGGAATTGCTTTT 138605 ||||| |||||||| Sbjct 15262456 TTTGGTGTTGCTTTT 15262442 >seq7 Length=31244610 Score = 313 bits (346), Expect = 3e-80 Identities = 343/456 (75%), Gaps = 0/456 (0%) Strand=Plus/Plus Query 135872 ATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCATCCTTTCCACATGTTGGGAGTT 135931 ||| |||| |||||||||||||| ||||| || |||||||| || |||||||| || || Sbjct 14634321 ATGATTGTATTCCAGGCAGAACATAACATCCTTATGCATCCATTTCACATGTTAGGTGTA 14634380 Query 135932 GCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCATGGATCTCTTGTCACCTCTAGT 135991 ||||| || ||||| ||||| || ||| |||||||||||| || | || ||||||||| Sbjct 14634381 GCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGT 14634440 Query 135992 CTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTATGGTTACAAGTTCGGTCAAGAA 136051 | | | || || ||||| |||||| || | ||||||| || |||||||| Sbjct 14634441 TTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGGGTTACAGATTTGGTCAAGAG 14634500 Query 136052 GAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTCGGTCGTCTGATCTTCCAATAT 136111 ||||||||||| || ||||| || ||||||||||| || || || | |||||||||||| Sbjct 14634501 GAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATAT 14634560 Query 136112 GCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTTGCTGCTTGGCCTGTTGTCGGT 136171 || || |||||||||||||| ||||||| ||| | |||||||||||||| | || Sbjct 14634561 GCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGCAGGG 14634620 Query 136172 ATCTGGTTTGCTGCCCTGGGCGTATCTACGATGGCGTTCAACCTCAATGGATTCAACTTC 136231 || ||||| |||| | || | ||| ||||| |||||||| || |||||||| ||| Sbjct 14634621 ATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATTTC 14634680 Query 136232 AACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTCAACACCTGGGCAGATGTGCTGAAT 136291 ||||| || | || | ||||||| || | || || ||||| ||| | | || Sbjct 14634681 AACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAAC 14634740 Query 136292 CGTGCTGGTCTGGGTATGGAGGTGATGCACGAGCGT 136327 |||||| ||| |||||||| || |||||||| ||| Sbjct 14634741 CGTGCTAATCTTGGTATGGAAGTAATGCACGAACGT 14634776 >seq12 Length=27944835 Score = 185 bits (204), Expect = 1e-41 Identities = 209/280 (75%), Gaps = 0/280 (0%) Strand=Plus/Plus Query 136044 GTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTCGGTCGTCTGATCT 136103 ||||||| ||||||||||| || ||| | | ||||||||||| || || || | |||| Sbjct 3609658 GTCAAGAGGAAGAGACTTATAATATTATGACCGCTCATGGTTATTTTGGCCGATTAATCT 3609717 Query 136104 TCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTTGCTGCTTGGCCTG 136163 |||||||||| || |||||||||||||| ||||||| ||| | ||||||||||||| Sbjct 3609718 TCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTG 3609777 Query 136164 TTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACGATGGCGTTCAACCTCAATGGAT 136223 | | || || ||||| |||| | || | ||| ||| | |||||||| || |||| Sbjct 3609778 TAGCAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGACTTTCAACCTAAACGGAT 3609837 Query 136224 TCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTCAACACCTGGGCAGATG 136283 |||| || ||||| || | || | ||||||| || | || |||||||| ||| Sbjct 3609838 TCAATTTAAACCAATCTGTAGTTGATAACCAAGGTCGCGTTGTTAATACCTGGGCTGATA 3609897 Query 136284 TGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGA 136323 | | ||||||||| ||| |||||||| || |||||||| Sbjct 3609898 TCATCAATCGTGCTAATCTTGGTATGGAAGTAATGCACGA 3609937 Score = 109 bits (120), Expect = 7e-19 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 138705 GCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTC 138764 || ||||| ||||| || || ||||| |||||| | |||||||||||||| ||||| ||| Sbjct 26735466 GCCTATGACTTCGTTTCCCAGGAAATCCGTGCAACGGAAGATCCTGAATTTGAGACTTTC 26735525 Query 138765 TACACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATCAA 138824 |||||||| || |||||| | || || ||| | |||| |||||||| || |||||| Sbjct 26735526 TACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGTGTGGATGGCAGCTCAGGATCAG 26735585 Query 138825 CCT 138827 ||| Sbjct 26735586 CCT 26735588 >seq9 Length=26294017 Score = 129 bits (142), Expect = 7e-25 Identities = 146/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 138307 TGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAGCAATCTTCCGATTCC 138366 |||| |||||| ||||||||||||| || ||||| || ||||| || || |||||| Sbjct 19895511 TGGGACAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCA 19895452 Query 138367 TGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTTCATATGATGGGCGTAG 138426 | | ||| | || || || ||||| ||||| | ||||| |||||||||||||| || | Sbjct 19895451 TCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTG 19895392 Query 138427 CAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTGCTACAGTAGAAAATACTT 138486 | || | | || | |||||||| || ||||||||||| || || || ||||| ||| Sbjct 19895391 CCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCAACCGTGGAAAACACTC 19895332 Query 138487 TGTATGAAGATGGCGA 138502 | | ||| || || || Sbjct 19895331 TATTTGAGGACGGTGA 19895316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627967905804800