Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq7 277 5e-70 seq12 145 2e-30 >seq7 Length=31244610 Score = 277 bits (306), Expect = 5e-70 Identities = 354/488 (73%), Gaps = 0/488 (0%) Strand=Plus/Plus Query 19786 TTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTG 19845 ||||| | |||||||| |||||||| || |||||||||||||| || |||||| | |||| Sbjct 14634319 TTATGATTGTATTCCAGGCAGAACATAACATCCTTATGCATCCATTTCACATGTTAGGTG 14634378 Query 19846 TTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCT 19905 | ||||| |||||||| || || || ||| ||||||||| || ||||| || || Sbjct 14634379 TAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTA 14634438 Query 19906 CGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAG 19965 | |||| |||||| ||||| | | ||| || | || || | || || |||| Sbjct 14634439 GTTTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGGGTTACAGATTTGGTCAAG 14634498 Query 19966 ATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAAT 20025 | |||||||| ||||||||||| || || || || || ||||| |||| || || |||| Sbjct 14634499 AGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAAT 14634558 Query 20026 ATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTG 20085 ||||| ||| || || |||||||||||||| ||||| | ||| ||| || || | | Sbjct 14634559 ATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGCAG 14634618 Query 20086 GCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACT 20145 | || ||| | || | | || || | ||||||||||||||||| || || || || | Sbjct 14634619 GGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATT 14634678 Query 20146 TTAACCAGTCAGTAGTTGATGTCAACGGAAAGATAATCCCAACATGGGCTGATGTATTAA 20205 | ||||| || ||||||||| | | || | || || ||||||||| | | | Sbjct 14634679 TCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCA 14634738 Query 20206 ATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTTCCCACTTG 20265 | | ||||| || || | ||||| |||||||| || |||||||| |||||||| || | Sbjct 14634739 ACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAG 14634798 Query 20266 ATTTAGCT 20273 | ||||| Sbjct 14634799 ACCTAGCT 14634806 >seq12 Length=27944835 Score = 145 bits (160), Expect = 2e-30 Identities = 209/294 (71%), Gaps = 8/294 (3%) Strand=Plus/Plus Query 19962 CAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTT 20021 ||||| |||||||| ||||||||| | | || || || || ||||| |||| || || Sbjct 3609660 CAAGAGGAAGAGACTTATAATATTATGACCGCTCATGGTTATTTTGGCCGATTAATCTTC 3609719 Query 20022 CAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTG 20081 ||||||||| ||| || || |||||||||||||| ||||| | ||| ||| || || Sbjct 3609720 CAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTA 3609779 Query 20082 GTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTT 20141 | || || ||| | || | | || || | |||||| |||||||||| || || || Sbjct 3609780 GCAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGACTTTCAACCTAAACGGATTC 3609839 Query 20142 AACTTTAACCAGTCAGTAGTTGATGTCAA----CGGAAAGATAATCCCAACATGGGCTGA 20197 || || ||||| || ||||||||| | | || | |||| || |||||||| Sbjct 3609840 AATTTAAACCAATCTGTAGTTGATAACCAAGGTCGCGTTGTTAAT----ACCTGGGCTGA 3609895 Query 20198 TGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCA 20251 | | | ||| | ||||| || || | ||||| |||||||| | |||||||| Sbjct 3609896 TATCATCAATCGTGCTAATCTTGGTATGGAAGTAATGCACGAACATAATGCTCA 3609949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144441579417072