Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq7 293 4e-74 seq12 154 2e-32 >seq7 Length=31244610 Score = 293 bits (324), Expect = 4e-74 Identities = 358/486 (74%), Gaps = 2/486 (0%) Strand=Plus/Plus Query 212068 ATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTT 212127 ||| | |||||||| ||||||||||||||||||||||| ||||| || ||| |||||| Sbjct 14634321 ATGATTGTATTCCAGGCAGAACATAACATCCTTATGCATCCATTTCACATGTTAGGTGTA 14634380 Query 212128 GCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCA 212187 || ||| | ||||| || | ||||| ||||||||| ||||| | || || ||| Sbjct 14634381 GCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGT 14634440 Query 212188 CTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAA 212247 | ||| | |||||||||| || || || | ||||||| || || ||||| Sbjct 14634441 TTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGGGTTACAGATTTGGTCAAGAG 14634500 Query 212248 GAAGAGACATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTAT 212307 |||||||| ||||| || || || || ||||| || || || || | |||||||| ||| Sbjct 14634501 GAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATAT 14634560 Query 212308 GCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGT 212367 || || |||||| | ||||||||||||| | || | ||||||| || | | Sbjct 14634561 GCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTG-TAGCAGG 14634619 Query 212368 G-TATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTT 212426 | | ||||| || || | ||||| | || ||||| ||||||||||| |||||||| || Sbjct 14634620 GATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATTT 14634679 Query 212427 CAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAA 212486 ||||||||| || |||||| |||| ||| || |||||||| |||| | | || Sbjct 14634680 CAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAA 14634739 Query 212487 CAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGA 212546 | | || || |||||||||||||| ||||||||| | ||||| ||||||||||| || || Sbjct 14634740 CCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGA 14634799 Query 212547 CTTAGC 212552 | |||| Sbjct 14634800 CCTAGC 14634805 >seq12 Length=27944835 Score = 154 bits (170), Expect = 2e-32 Identities = 223/312 (71%), Gaps = 2/312 (1%) Strand=Plus/Plus Query 212242 CAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTC 212301 ||||| |||||||| ||||| || | | || ||||| || || || || | |||||| Sbjct 3609660 CAAGAGGAAGAGACTTATAATATTATGACCGCTCATGGTTATTTTGGCCGATTAATCTTC 3609719 Query 212302 CAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGGCCTGTT 212361 || ||||| || |||||| | ||||||||||||| | || | ||||||| | Sbjct 3609720 CAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTG-T 3609778 Query 212362 ATCTGTG-TATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAATGGATT 212420 | | | | | ||||| || || | ||||| | || ||| | ||||||||||| ||||| Sbjct 3609779 AGCAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGACTTTCAACCTAAACGGATT 3609838 Query 212421 CAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTACTTGGGGTGATGT 212480 ||| || |||||||| || |||||| |||| |||||| ||| |||| |||| | Sbjct 3609839 CAATTTAAACCAATCTGTAGTTGATAACCAAGGTCGCGTTGTTAATACCTGGGCTGATAT 3609898 Query 212481 TCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACACAACTTCCC 212540 | || | || || |||||||||||||| ||||||||| ||||| |||| || | Sbjct 3609899 CATCAATCGTGCTAATCTTGGTATGGAAGTAATGCACGAACATAATGCTCACAGTTTTTC 3609958 Query 212541 ACTTGACTTAGC 212552 || ||| |||| Sbjct 3609959 TCTAGACCTAGC 3609970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807555078866720