Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq1 318 7e-82 seq7 297 2e-75 seq12 174 2e-38 seq2 107 2e-18 >seq1 Length=46096743 Score = 318 bits (352), Expect = 7e-82 Identities = 694/1039 (67%), Gaps = 24/1039 (2%) Strand=Plus/Minus Query 171795 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 171854 ||||| || | || || |||||| | ||||| ||||| || || | ||||||||||| Sbjct 45923518 TTTGATATTATGGACGACTGGTTAGA-AGAGACCGTTTTGTTTTT-TAGGATGGTCTGGC 45923461 Query 171855 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 171914 || || ||||| ||||||||||| | || | ||||||||||| ||| || ||||| Sbjct 45923460 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 45923401 Query 171915 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTTTTA 171974 || || || ||||| || ||||| | || || ||| | || || || || ||| Sbjct 45923400 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTA 45923341 Query 171975 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGGGGA 172034 || || ||||| || || |||| || | | | || | | ||| | |||||||| Sbjct 45923340 ACCGCGGCAGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGC 45923281 Query 172035 CCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTA 172094 || || |||||||| ||| || || |||| |||||||||||| || |||| ||||| Sbjct 45923280 CCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 45923221 Query 172095 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGA 172154 || | ||||| | |||| ||| |||||||||||| | | || ||||| |||| | Sbjct 45923220 GCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGG 45923161 Query 172155 CTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATTCACG 172214 |||| | || ||||| || ||| | ||||||| | || || || || Sbjct 45923160 TCTGTTCAATTGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTT 45923101 Query 172215 AGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGGT 172274 | | || || || |||||| | || || |||||||||| | || ||||| Sbjct 45923100 TCCTTATTCCTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTTCGCCGAGTTTTGGC 45923041 Query 172275 GTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAAT 172334 || ||||| || ||||| | || | ||| | || || || || ||| || | || Sbjct 45923040 GTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAAC 45922981 Query 172335 CCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACAT 172394 ||||||||||||||||| || || | || | |||| || | ||||| || || ||| Sbjct 45922980 CCATTTCATATGATGGGAGTTGCCAGAGTATTAGGTGCGGCTCTGCTATGCGCTATTCAT 45922921 Query 172395 GGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATT 172454 || ||||| || | ||||| | | ||| | || ||| ||| Sbjct 45922920 GGGGCAACTGTGGAAAACACTCTATTTGAGG------------ACGGTGATGGT------ 45922879 Query 172455 CAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATAGTATGATT 172514 | | || ||| | || || | || || || | |||||||||||| ||| | Sbjct 45922878 ---GCAAATACCTTCCGCGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTC 45922822 Query 172515 ACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTA 172574 || | ||| | || ||||| || || |||||| | || ||||| || ||| | | ||| Sbjct 45922821 ACCGTTAATCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTA 45922762 Query 172575 CACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTA 172634 || ||| ||||| | || ||||| |||| ||| | |||| |||| || | || Sbjct 45922761 CATTTCTTTATGCTATTTGTACCGGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTC 45922702 Query 172635 GGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAA 172694 || || || || ||||| | || || ||||| || || || || || | ||||| || Sbjct 45922701 GGCCTGGCTCTAAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGAAA 45922642 Query 172695 GACCCAGAGTTTGA-AACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGC 172753 || || || ||||| || |||||||| || || |||||| | || || ||||| | || Sbjct 45922641 GATCCTGAATTTGAGTACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGC 45922582 Query 172754 ATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCC 172813 |||||| || || ||||| || ||||| || || | ||||| || || || | || Sbjct 45922581 GTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACC 45922522 Query 172814 ACGAGGCAACGCACTATAA 172832 ||| || ||||| || ||| Sbjct 45922521 ACGTGGAAACGCTCTTTAA 45922503 Score = 170 bits (188), Expect = 2e-37 Identities = 241/339 (71%), Gaps = 6/339 (2%) Strand=Plus/Minus Query 172494 GAAGAAACTTATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCA 172553 |||||||||||| ||| | ||||||||| | || ||||| || || |||||| | || Sbjct 13891575 GAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCT 13891516 Query 172554 TTTTCAAACAAAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGG 172613 ||||| || ||| | | ||||| ||| ||||| | || ||||| |||| ||| | ||| Sbjct 13891515 TTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGG 13891456 Query 172614 ACATCATCTATAGGTATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCT 172673 | |||| || | || || || || || ||||| | || || ||||| || || Sbjct 13891455 ATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCC 13891396 Query 172674 CAAGAGATAAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTT 172733 || || || | ||||| ||||| || || ||||| || |||||||| || || |||||| Sbjct 13891395 CAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTT 13891336 Query 172734 CTTAATGAAGGTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTG 172793 | || || ||||| | || |||||| || || ||||| || ||||| || || | Sbjct 13891335 TTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATA 13891276 Query 172794 TTCCCAGAAGAAGTCTTGCCACGAGGCAACGCACTATAA 172832 ||||| || || |||||| |||||||| || ||| Sbjct 13891275 TTCCCTGAGGA------GCCACGTGGCAACGCTCTTTAA 13891243 >seq7 Length=31244610 Score = 297 bits (328), Expect = 2e-75 Identities = 359/486 (74%), Gaps = 2/486 (0%) Strand=Plus/Plus Query 171164 ATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTA 171223 ||| | || ||||| |||||||| ||||| || ||||| || || || ||| ||||||| Sbjct 14634321 ATGATTGTATTCCAGGCAGAACATAACATCCTTATGCATCCATTTCACATGTTAGGTGTA 14634380 Query 171224 GCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCT 171283 || ||| | ||||| ||| || |||||||| ||||| ||||| | || || ||| | Sbjct 14634381 GCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGT 14634440 Query 171284 CTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAA 171343 | ||||| || || ||||| ||||| || | || || | || || ||||| Sbjct 14634441 TTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGGGTTACAGATTTGGTCAAGAG 14634500 Query 171344 GAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTAT 171403 ||||| || ||||| ||||| || |||||||| || || || ||||||||||||| ||| Sbjct 14634501 GAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATAT 14634560 Query 171404 GCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGT 171463 || || |||||||||||||| |||||||||||| | |||| | ||||||| | Sbjct 14634561 GCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGCAGGG 14634620 Query 171464 GTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTC 171523 | ||||| || || | ||||| |||| ||||| |||||||| ||||||||||| ||| Sbjct 14634621 ATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATTTC 14634680 Query 171524 AACCAATCAGTTGTAGAT-GCAAACGGAAAGATTGTACCAACATGGGGAGATGTTCTTAA 171582 |||||||| || || ||| || || || || | || |||| ||| | | || Sbjct 14634681 AACCAATCTGTAGTTGATAGCCAA-GGTCGCGTTATTAATACTTGGGCTGATATCATCAA 14634739 Query 171583 CAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGA 171642 | | || || ||||| |||||||| ||||| ||| | ||||| ||||||||||| ||||| Sbjct 14634740 CCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGA 14634799 Query 171643 CCTAGC 171648 |||||| Sbjct 14634800 CCTAGC 14634805 >seq12 Length=27944835 Score = 174 bits (192), Expect = 2e-38 Identities = 225/311 (72%), Gaps = 0/311 (0%) Strand=Plus/Plus Query 171338 CAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTC 171397 ||||| ||||| || ||||| ||| | | |||||||| || || || ||||||||||| Sbjct 3609660 CAAGAGGAAGAGACTTATAATATTATGACCGCTCATGGTTATTTTGGCCGATTAATCTTC 3609719 Query 171398 CAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTA 171457 || ||||| || |||||||||||||| |||||||||||| | |||| | |||||| Sbjct 3609720 CAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTA 3609779 Query 171458 GTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTC 171517 | | | ||||| || || | ||||| |||| ||| | |||||||| ||||||||| Sbjct 3609780 GCAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGACTTTCAACCTAAACGGATTC 3609839 Query 171518 AACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAACATGGGGAGATGTT 171577 || || |||||||| || || ||| | || |||| || |||| ||| | Sbjct 3609840 AATTTAAACCAATCTGTAGTTGATAACCAAGGTCGCGTTGTTAATACCTGGGCTGATATC 3609899 Query 171578 CTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCA 171637 | || | || || ||||| |||||||| ||||| ||| ||||| |||| || | Sbjct 3609900 ATCAATCGTGCTAATCTTGGTATGGAAGTAATGCACGAACATAATGCTCACAGTTTTTCT 3609959 Query 171638 CTAGACCTAGC 171648 ||||||||||| Sbjct 3609960 CTAGACCTAGC 3609970 >seq2 Length=39559433 Score = 107 bits (118), Expect = 2e-18 Identities = 183/263 (70%), Gaps = 2/263 (1%) Strand=Plus/Plus Query 171795 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 171854 |||||| || | ||||| ||||||| || || | ||| || || | |||| ||| | Sbjct 19905520 TTTGACATTATGGATGACTGGTTAAGAAGGGACCATTTTGTTTTT-TATGATGATCTAGC 19905578 Query 171855 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 171914 |||| ||||| ||||||||||| | || | ||||||||||| ||| || ||||| Sbjct 19905579 GTTTTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 19905638 Query 171915 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTTTTA 171974 || || || ||||| || ||||| | || || ||| | || || || || ||| Sbjct 19905639 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTA 19905698 Query 171975 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGGGGA 172034 || |||||||| || || |||| || | | | || | | ||| | |||||||| Sbjct 19905699 ACCGCAGCAGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGC 19905758 Query 172035 CCTGAGGCACAAGGAGATCTTGT 172057 || || |||||||| ||| |||| Sbjct 19905759 CCAGAAGCACAAGGGGAT-TTGT 19905780 Score = 96.9 bits (106), Expect = 4e-15 Identities = 111/148 (75%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 171795 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 171854 ||||| || | || || |||||| ||||| ||||| || || | ||||||||||| Sbjct 8166110 TTTGATATTATGGACGACTGGTTACGAAGAGACCGTTTTGTTTTTGTAGGATGGTCTGGC 8166051 Query 171855 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 171914 || || ||||| ||||||||||| | || | ||||||||||| ||| || ||||| Sbjct 8166050 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 8165991 Query 171915 GTGACCTCATGGTACACACATGGTATTG 171942 || || || ||||| || ||||| |||| Sbjct 8165990 GTAACTTCTTGGTATACCCATGG-ATTG 8165964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570268714459680