Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2 95.1 3e-14 seq6 89.7 1e-12 seq11 84.2 6e-11 >seq2 Length=39559433 Score = 95.1 bits (104), Expect = 3e-14 Identities = 156/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACT-TAAGAATTGTGCTCTTATTTC 363680 ||||| || ||| || ||||| || | ||| || || | ||||| ||||| || Sbjct 38035514 ATGAAAGATGATAGTATTGAGGGAATTTATGATACTCTCTCAGAAT-GTGCTACCATAAG 38035572 Query 363681 CAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACA 363739 ||| ||| || ||| ||||||| || || |||||| || | || || | ||||||| Sbjct 38035573 CAAATGTGCTGGTGGAGTTGGTGTCTCAATTCACAATATTAGAGCTACTGGG-AGTTACA 38035631 Query 363740 TTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATA 363799 |||| || ||| ||| || |||||| | ||||||||||| ||||| || | ||| Sbjct 38035632 TTCGAGGGACAAATGGAACATCTAATGGGATTGTTCCCATGCTGCGTGTTTTCAATGATA 38035691 Query 363800 CTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 |||| | || || || || |||||||| ||| | ||||| Sbjct 38035692 CTGCATGTTATGTTGATCAAGGTGGAGGCAAGAGAAAAGG 38035731 >seq6 Length=34615992 Score = 89.7 bits (98), Expect = 1e-12 Identities = 154/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || || ||| ||||| |||| ||| || | ||| | |||||| | || | Sbjct 2940864 ATGAAAGATGACAGCATTGAGGGAATCTATGATACTTTGAAGGAATGTGCTGTCATAAGC 2940805 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 || ||| || || ||||||||||| | |||||| |||| || || | || || || Sbjct 2940804 AAATCTGCTGGAGGCATTGGTGTATCAGTTCACAATATTCGAGCTACTG-GGAGCTATAT 2940746 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 || || ||| ||| ||| |||||| | ||||| ||||| ||||| || | |||| Sbjct 2940745 CCGAGGAACAAATGGAACCTCTAATGGGATTGTTCCTATGCTACGTGTTTTCAATGATAC 2940686 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 || | || || || || |||||||| ||| | |||||| Sbjct 2940685 GGCCCGTTATGTTGATCAAGGTGGAGGCAAGAG-AAAGGG 2940647 >seq11 Length=28494620 Score = 84.2 bits (92), Expect = 6e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 111701 CCAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATAT 111760 |||||||||||| | |||| ||| |||||||| |||||||| || ||||||||||| Sbjct 18049452 CCAGTTTTATGTTGAGAGCGGGGAGCTATCATGCCAGATGTATCAACGCTCTGCTGATAT 18049511 Query 111761 TGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCA 111820 || ||||||||||| || || || ||| || | || || || | | | || ||||| Sbjct 18049512 GGGACTTGGTGTTCCATTCAACATCGCATCATATTCTCTTCTGACATACATGATTGCTCA 18049571 Query 111821 TTTT 111824 | || Sbjct 18049572 TGTT 18049575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353399609384