Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq10 131 1e-25 seq9 131 1e-25 seq2 89.7 3e-13 seq3 86.0 4e-12 >seq10 Length=25992119 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 8046722 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 8046781 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 8046782 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 8046816 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||| || ||||||||| ||| || |||||||| Sbjct 8146649 AAGCCCGTTCCCTTGGCTGTGGTTTCCCTGGATAGTAGACGGGGACAGTGGGAATCTCGT 8146708 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 8146709 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 8146743 Score = 102 bits (112), Expect = 5e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 8072569 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 8072628 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 8072629 GCCTATATTTAGCCTT 8072644 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 8056172 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 8056231 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 8056232 GCCTGTATTTAGCCTT 8056247 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 8007502 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 8007561 Query 20007 GGTAATATTTAGCCTT 20022 | |||||| |||| Sbjct 8007562 GCCTGTATTTAACCTT 8007577 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||||||| |||||||||||||||||||||||| | Sbjct 8063403 CTCTCTTTTCAAAGTCCTTTTCATATTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 8063462 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 8063463 GCCTGTATTTAGCCTT 8063478 >seq9 Length=26294017 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 19285951 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 19285892 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 19285891 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 19285857 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 19286343 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 19286284 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 19286283 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 19286249 >seq2 Length=39559433 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||||||||| || |||||| ||||| |||||||| | ||| || | || || Sbjct 31556165 ACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGCCAATGTGCGCCCATCCTCC 31556224 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | ||| || || ||||| || || | || || || | |||| ||| || |||||| Sbjct 31556225 AGTTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGG 31556284 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 |||||| ||| ||||| | || || || || || ||||| | || || || || Sbjct 31556285 ATTTTTGCCTTGACATTGTCGATGGTGTCAGAGCTCTCCACTTCCAGAGTTATGGTCTTG 31556344 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || |||| || ||||| || |||||||| Sbjct 31556345 CCAGTCAGAGTCTTCACAAAGATCTGCAT 31556373 >seq3 Length=38925377 Score = 86.0 bits (94), Expect = 4e-12 Identities = 64/75 (85%), Gaps = 4/75 (5%) Strand=Plus/Minus Query 25914 TTGGCTGTGGTTTCGCTAGATAGTAGATAGGG----GGTAATCTCGTTAATCCTTTCATG 25969 ||||||||| ||||||| ||||||||| |||| | |||||| ||||||| |||||| Sbjct 19442840 TTGGCTGTGATTTCGCTGGATAGTAGACAGGGACAGGAGAATCTCATTAATCCATTCATG 19442781 Query 25970 CGCGTCACTAATTAG 25984 ||||||||||||||| Sbjct 19442780 CGCGTCACTAATTAG 19442766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334947151013972