Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2 132 4e-26 seq6 123 2e-23 seq5 122 8e-23 seq4 96.9 3e-15 >seq2 Length=39559433 Score = 132 bits (146), Expect = 4e-26 Identities = 159/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| |||| || || |||| || | ||||||||| ||| Sbjct 31556373 ATGCAGATCTTTGTGAAGACTCTGACTGGCAAGACCATAACTCTGGAAGTGGAGAGCTCT 31556314 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| || || ||| ||||||| ||||| || || || |||||||||| Sbjct 31556313 GACACCATCGA--CAATGTCAAGGCAAAAATCCAGGACAAGGAGGGCATCCCACCTGACC 31556256 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || | || ||||| || || ||| | || |||| ||||| ||| |||||||| Sbjct 31556255 AGCAGAGGCTCATCTTTGCTGGGAAGCAACTGGAGGATGGGCGCACATTGGCCGATTACA 31556196 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | ||||| || || || || || ||||| || || Sbjct 31556195 ACATTCAGAAGGAGTCTACCCTTCATTTGGTCCT 31556162 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||||| || ||||||| |||| ||||| || ||| Sbjct 2779362 ATGCAGATCTTTGTCAAGACACTGACCGGCAAGACCATCACCCTCGAGGTGGAATCTTCT 2779303 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| || || ||||| || ||||| Sbjct 2779302 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 2779243 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || |||| | || | | || ||||| Sbjct 2779242 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCAGGACCCTCGCTGACTACAAC 2779183 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || || || || | || || | || || ||||| Sbjct 2779182 ATCCAGAAGGAGTCGACCCTCCACCTTGTCCTCCGTCTCAGGGGAGG 2779136 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || || | ||||| | || || ||| || Sbjct 31556829 ATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACTATCACTCTTGATGTAGAGAGTTCC 31556770 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || || |||| || ||| ||||| || || || || || ||| Sbjct 31556769 GACACCATTGA--CAATGTTAAAGC-CAAGATCCAGGACAAGGAGGGTATCCCCCCAGAC 31556713 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||| || | || ||||| ||||| ||| |||| |||| || || | | || || Sbjct 31556712 CAACAGAGGCTCATCTTTGCTGGCAAGCAACTAGAGGATGGCCGGACACTCGCTGACTAT 31556653 Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201 || |||||||| |||||||| || || Sbjct 31556652 AACATTCAAAAGGAATCCACCCTCCA 31556627 >seq6 Length=34615992 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | ||||| || ||||||| |||| || ||||||||| Sbjct 31538213 ATGCAGATCTTTGTGAAGACACTTACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTCT 31538154 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || || || | || || | ||| ||||| || || |||||||||||| Sbjct 31538153 GATACAATTGA--CAATGTCAAGGCCAAGATTCAG-GACAAGGAGGGCATTCCACCTGAC 31538097 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || | || ||||| ||||| ||| |||| |||| |||||| | | |||||| Sbjct 31538096 CAGCAACGTCTCATCTTTGCTGGCAAGCAACTAGAGGATGGTCGCACCCTCGCGGATTAC 31538037 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || ||||| || || | || || | || || ||||| Sbjct 31538036 AACATCCAGAAGGAGTCCACCCTCCACCTTGTCCTTCGCCTCAGGGGAGG 31537987 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| || || ||||||| | || || ||||| || Sbjct 31537985 ATGCAGATCTTTGTGAAGACCTTGACAGGAAAGACCATCACTCTTGAGGTCGAGTCCTCG 31537926 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| || ||| ||||| || || || || ||||| || Sbjct 31537925 GACACGATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCTCCTGATCAG 31537866 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || || | | | || ||| |||||||| Sbjct 31537865 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGTAGGACCCTGGCTGATTACAAC 31537806 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| || || ||||| || || | ||||| || || || || || Sbjct 31537805 ATTCAGAAGGAGTCCACCCTCCACCTTGTGCTCAGACTTAGGGGTGG 31537759 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| || || ||||||| | || || ||||||||| Sbjct 32009470 ATGCAGATCTTCGTGAAGACCTTGACTGGAAAGACCATCACCCTTGAGGTCGAGTCGTCT 32009529 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||| || || || || || ||||| Sbjct 32009530 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 32009589 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || ||||| || | || || | ||||| ||| ||| ||||| Sbjct 32009590 CAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACCCTGGCCGACTACAAC 32009649 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || ||| | ||||| ||||| || ||||| Sbjct 32009650 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTCAGGCTCAGGGGAGG 32009696 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| |||| || ||||||||| Sbjct 32009698 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGTCGTCT 32009757 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||| || || || || || ||||| Sbjct 32009758 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 32009817 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || ||||| || | || || | || || | | ||||||||| Sbjct 32009818 CAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGTACCCTTGCCGATTACAAC 32009877 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || |||||||| || ||| | ||||| ||||| || ||||| Sbjct 32009878 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTCAGGCTCAGGGGAGG 32009924 >seq5 Length=31082981 Score = 122 bits (134), Expect = 8e-23 Identities = 168/233 (72%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || |||| || |||| || ||||| || Sbjct 9802049 ATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATAACCCTCGAGGTTGAGTCCTCA 9801990 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || ||||| |||| | || || | ||| ||||| || || ||||||||||| Sbjct 9801989 GATACGATCGACAACGTCA---AGGCCAAGATTCAG-GACAAGGAGGGTATTCCACCTGA 9801934 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||||||| | || ||||| ||||| ||| | || |||| ||||| | | ||||| Sbjct 9801933 CCAACAGCGCCTCATCTTTGCGGGCAAGCAACTCGAGGATGGCCGCACCCTTGCAGATTA 9801874 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||| ||||| ||||| ||||| || || | || || | || || ||||||| Sbjct 9801873 CAACATTCAGAAAGAGTCCACCCTCCACCTTGTCCTTCGCCTCAGGGGAGGAA 9801821 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || |||| || | || || ||||| || Sbjct 9801593 ATGCAGATTTTCGTCAAGACCCTGACCGGCAAGACCATTACGCTTGAGGTCGAGTCTTCC 9801534 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| ||||| | || | ||| ||||| || || || || || ||||| Sbjct 9801533 GATACAATCGACAATGTGAAGGCGAAGATTCAG-GACAAGGAGGGCATCCCTCCGGACCA 9801475 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || |||||||| || | || || | |||||| ||| |||||||| Sbjct 9801474 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGACGCACTCTGGCTGATTACAA 9801415 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| || || ||||| || || | ||||||||||| || || || Sbjct 9801414 CATTCAGAAGGAGTCCACTCTCCACCTCGTGCTAAGGCTCAGGGGTGG 9801367 Score = 109 bits (120), Expect = 5e-19 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| |||||||| || | ||||| | || |||||||| ||| Sbjct 26219451 ATGCAAATATTTGTCAAGACCTTGACCGGAAAGACTATCACCCTTGAGGTGGAGTCCTCT 26219510 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || || || || || ||| ||| ||| ||||| || || ||||| || |||| Sbjct 26219511 GATACCATTGA--CAATGTTAAGGCAAAGATCCAGGACAAGGAGGGCATTCCCCCAGACC 26219568 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || ||||| ||||| || | || |||| | || | | || |||| Sbjct 26219569 AGCAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCAGGACCCTTGCTGACTACA 26219628 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | || || || || ||||| || || | || || | || || ||||||| Sbjct 26219629 ACATCCAGAAGGAGTCCACCCTCCACCTTGTCCTCCGCCTCAGGGGAGGAA 26219679 >seq4 Length=33711903 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| || ||||||| | || || ||||| ||| Sbjct 30264739 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTTGAGTCCTCT 30264798 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| || ||| ||||| || || |||||||| || || Sbjct 30264799 GACACAATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCACCAGATCAG 30264858 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || |||| || || | | || ||||| Sbjct 30264859 CAGCGCCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGACGTACCCTTGCAGACTACAAC 30264918 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || ||||| || || Sbjct 30264919 ATCCAGAAGGAGTCCACCCTGCA 30264941 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||| || ||||| | ||||| || |||| || | || || ||||||||| Sbjct 30264511 ATGCAAATATTCGTGAAGACCCTCACCGGCAAGACCATTACCCTGGAGGTCGAGTCGTCT 30264570 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| || ||| || || || || || || || ||||| Sbjct 30264571 GACACGATCGATAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCAGACCAG 30264630 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 |||||| | || || || ||||| || | || || | |||||| | | || || || Sbjct 30264631 CAGCGGCTCATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACCCTTGCTGACTATAAC 30264690 Query 25179 ATTCAAAAAGAATCCAC 25195 || || || || ||||| Sbjct 30264691 ATCCAGAAGGAGTCCAC 30264707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327936625780