Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq1 493 1e-134 seq7 363 2e-95 seq12 230 3e-55 seq9 138 1e-27 seq2 91.5 2e-13 >seq1 Length=46096743 Score = 493 bits (546), Expect = 1e-134 Identities = 725/1018 (71%), Gaps = 11/1018 (1%) Strand=Plus/Minus Query 167300 TTTGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 167359 |||||| | |||| |||||| ||| | | ||||| ||||| ||| | || |||||||| Sbjct 45923518 TTTGATATTATGGACGACTGG-TTAGAAGAGACCGTTTTGTTTTT-TAGGATGGTCTGGC 45923461 Query 167360 TTACTTCTTTTTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 167419 || | |||||||| ||||||| | || | || || ||| |||| || || || ||| Sbjct 45923460 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 45923401 Query 167420 GTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGTTACC--TTG--AGGGTGCTAATTT 167475 || || ||||||||||| || |||||| |||| | ||| ||| ||| ||||| Sbjct 45923400 GTAACTTCTTGGTATACCCATGGATTGGCG---AGTTCCTATTTGGAAGGTTGC-AATTT 45923345 Query 167476 TCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTG 167535 | || || ||||| || || ||||| | | | | || ||| | | ||||| || Sbjct 45923344 CTTAACCGCGGCAGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATG 45923285 Query 167536 GGGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTT 167595 ||| || || | || |||||||| | | ||||| || | || || || ||| |||| Sbjct 45923284 GGGCCCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTT 45923225 Query 167596 TGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGATAAG 167655 ||| || ||||| || || ||||| || ||||| || ||| | || |||||||| | Sbjct 45923224 TGTTGCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGC 45923165 Query 167656 TAGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTT 167715 | | || | || ||||| ||||| ||| | || ||||| || || ||||| || Sbjct 45923164 TCGGTCTGTTCAATTGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTT 45923105 Query 167716 TGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTT 167775 ||| || | || || || ||||| || ||||| ||| ||||||||||| | ||| || Sbjct 45923104 TGTTTCCTTATTCCTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTTCGCCGAGTTT 45923045 Query 167776 TGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCT 167835 ||| || |||||||||||| ||||| | || ||| | || || || ||||| |||||| | Sbjct 45923044 TGGCGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTT 45922985 Query 167836 CAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAAT 167895 ||||| || ||||||||||||||||| | | |||| | || |||| | || || Sbjct 45922984 GAACCCATTTCATATGATGGGAGTTGCCAGAGTATTAGGTGCGGCTCTGCTATGCGCTAT 45922925 Query 167896 CCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAA 167955 ||||| | || || || || ||||| | ||| || ||||| ||||| || ||| Sbjct 45922924 TCATGGGGCAACTGTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCG 45922865 Query 167956 AGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTG 168015 || ||| | | ||||| | || ||||||||||| |||||||| | ||| || || || Sbjct 45922864 CGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGTTAATCGCTTTTG 45922805 Query 168016 GTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTT 168075 ||| ||||| |||||| ||||||| |||||| |||||||| || ||||||||||| || Sbjct 45922804 GTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATT 45922745 Query 168076 CGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCT 168135 || || |||| || | |||| ||| ||||||| | |||| || || || || || Sbjct 45922744 TGTACCGGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTAAACCT 45922685 Query 168136 TCGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGA-AA 168194 ||||| |||||||| || || |||||| | | ||||| | ||||| || ||||| | Sbjct 45922684 ACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGAAAGATCCTGAATTTGAGTA 45922625 Query 168195 CTTTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAG 168254 ||||||| || ||||| || || | || || || | ||||| |||||||| | | Sbjct 45922624 CTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGG 45922565 Query 168255 ACCAACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 168312 | || || |||||||| || ||||||| || || || | ||| | || |||||||| Sbjct 45922564 ATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 45922507 Score = 324 bits (358), Expect = 2e-83 Identities = 384/521 (74%), Gaps = 6/521 (1%) Strand=Plus/Minus Query 167792 TTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCTCAACCCTTTCCATATG 167851 ||| ||| | | || ||| | || || || ||||| |||||| | ||||| || |||||| Sbjct 13891761 TTTCGATCCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATG 13891702 Query 167852 ATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTA 167911 ||||||||||| || | |||||| || |||| | || |||||||| | ||| ||| Sbjct 13891701 ATGGGAGTTGCCGGAGTATTAGGCGCAGCTCTGCTATGCGCTATCCATGGGGCTACCGTA 13891642 Query 167912 GAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAAAGCATTTGATACGACT 167971 || || ||||| | ||||||||||| ||||| || ||| || ||| | | ||| Sbjct 13891641 GAAAACACTCTATTCGAAGATGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCCAACT 13891582 Query 167972 CAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATTTTTGGT 168031 || | || ||||||||||| ||||||||||||||||| || ||||| ||||| |||||| Sbjct 13891581 CAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGT 13891522 Query 168032 ATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTTCGTTCCTGTCATGGGA 168091 ||||||| |||||| |||||||| || ||||||||||| || || || |||| || Sbjct 13891521 GTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGT 13891462 Query 168092 CTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCTTCGTGCTTATGACTTT 168151 | |||| ||| ||||||| | | || || || || || || ||||| |||||||| Sbjct 13891461 TTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCTATGACTTC 13891402 Query 168152 GTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAACTTTCTATACGAAAAAC 168211 || || |||||| | | ||||| || ||||| || ||||| |||||||| || ||||| Sbjct 13891401 GTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAAT 13891342 Query 168212 ATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAACCACATGAAAAC 168271 || || | || || || | ||||| |||||||| | || || || |||||||| Sbjct 13891341 ATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAAT 13891282 Query 168272 TTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 168312 || ||||||| || || |||| | ||||||||||| Sbjct 13891281 CTTATATTCCCTGAGGA------GCCACGTGGCAACGCTCT 13891247 Score = 228 bits (252), Expect = 9e-55 Identities = 240/316 (76%), Gaps = 0/316 (0%) Strand=Plus/Minus Query 167724 TTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTTGGTGTTG 167783 |||| || || ||||| || ||||| ||| ||||||||||||||||| ||||| || | Sbjct 15262758 TTTTACTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTGCACCGAGTTTTGGCGTAG 15262699 Query 167784 CAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCTCAACCCTT 167843 ||||||||||| ||||| | || ||| | || || || ||||| |||||| | ||||| | Sbjct 15262698 CAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCAT 15262639 Query 167844 TCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAATCCATGGTG 167903 | ||||||||||||||||| || | |||||| || |||| | || || ||||| | Sbjct 15262638 TTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGG 15262579 Query 167904 TTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAAAGCATTTG 167963 || || || || ||||| | ||| |||||||| ||||| || ||| || ||| Sbjct 15262578 CAACCGTTGAAAACACTCTATTTGAGGATGGTGATGGTGCAAATACCTTCCGCGCTTTTA 15262519 Query 167964 ATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAA 168023 | | ||||| | || ||||||||||| |||||||| ||||| || || ||||| |||| Sbjct 15262518 ACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAATCGCTTTTGGTCCCAAA 15262459 Query 168024 TTTTTGGTATTGCTTT 168039 | |||||| ||||||| Sbjct 15262458 TCTTTGGTGTTGCTTT 15262443 >seq7 Length=31244610 Score = 363 bits (402), Expect = 2e-95 Identities = 376/490 (77%), Gaps = 2/490 (0%) Strand=Plus/Plus Query 166552 ATGCTTGTCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTA 166611 ||| |||| ||||| ||||| || |||||||| ||||| || || || ||| | |||||| Sbjct 14634321 ATGATTGTATTCCAGGCAGAACATAACATCCTTATGCATCCATTTCACATGTTAGGTGTA 14634380 Query 166612 GCAGGTGTATTCGGTGGGTCACTTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCG 166671 || ||||||||||| || || || ||| || ||||| || | || || || | | Sbjct 14634381 GCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAG 14634439 Query 166672 CTCG-TCCGTGAGACCACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGA 166730 | | || | || |||||||||| || || || | ||||||| ||||||||||| Sbjct 14634440 TTTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGGGTTACAGATTTGGTCAAGA 14634499 Query 166731 AGAAGAGACCTACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATA 166790 |||||||| || || || ||||| ||||||||||| || || || | ||||||||||| Sbjct 14634500 GGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATA 14634559 Query 166791 CGCTTCCTTCAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGG 166850 ||| || ||||||||||| || | ||||||||| | || || |||||||| | || Sbjct 14634560 TGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGCAGG 14634619 Query 166851 TATCTGGTTTACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTT 166910 || ||||| |||||| | ||| |||| || ||||| |||||||| ||||| ||||| || Sbjct 14634620 GATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATTT 14634679 Query 166911 CAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAA 166970 |||||| || | | ||| | || ||||| || | || |||||||| ||| || |||| Sbjct 14634680 CAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAA 14634739 Query 166971 CCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGA 167030 ||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 14634740 CCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGA 14634799 Query 167031 TCTTGCTGCT 167040 || |||||| Sbjct 14634800 CCTAGCTGCT 14634809 >seq12 Length=27944835 Score = 230 bits (254), Expect = 3e-55 Identities = 246/325 (76%), Gaps = 0/325 (0%) Strand=Plus/Plus Query 166714 TACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTGGCTGCTCATGGTTACTTCGGT 166773 |||| ||| ||||||| |||||||| || || || || | ||||||||||| || || Sbjct 3609648 TACAGATTTTGTCAAGAGGAAGAGACTTATAATATTATGACCGCTCATGGTTATTTTGGC 3609707 Query 166774 CGCCTGATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCGCTGCACTTCTTCCTCGCA 166833 || | ||||||||||| ||| || ||||||||||| || | ||||||||| | || Sbjct 3609708 CGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCT 3609767 Query 166834 GCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTTGGTGTTAGCACCATGGCATTCAAC 166893 || |||||||| | || || ||||| |||||| | ||| |||| || ||| | |||||| Sbjct 3609768 GCTTGGCCTGTAGCAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGACTTTCAAC 3609827 Query 166894 CTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACT 166953 || ||||| ||||| || ||||| || | | ||| || ||||| || | || || Sbjct 3609828 CTAAACGGATTCAATTTAAACCAATCTGTAGTTGATAACCAAGGTCGCGTTGTTAATACC 3609887 Query 166954 TGGGCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAATGCT 167013 ||||| ||| || |||| |||||| ||| |||||||||||||||||||| | ||||||| Sbjct 3609888 TGGGCTGATATCATCAATCGTGCTAATCTTGGTATGGAAGTAATGCACGAACATAATGCT 3609947 Query 167014 CACAACTTCCCTCTGGATCTTGCTG 167038 |||| || |||| || || |||| Sbjct 3609948 CACAGTTTTTCTCTAGACCTAGCTG 3609972 >seq9 Length=26294017 Score = 138 bits (152), Expect = 1e-27 Identities = 147/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 167744 GGACAGTCCAGTTGGTTCTTTGCACCGTCGTTTGGTGTTGCAGCGATATTTAGATTCCTA 167803 ||||| ||| ||||||||||||| ||| ||||| || |||||||||||| ||||| | Sbjct 19895509 GGACAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCATC 19895450 Query 167804 CTATTCCTACAGGGTTTCCATAACTGGACGCTCAACCCTTTCCATATGATGGGAGTTGCT 167863 || ||| | || || || ||||| |||||| | ||||| || ||||||||||||||||| Sbjct 19895449 CTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCC 19895390 Query 167864 GGTATCCTAGGCGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTCTG 167923 || | |||||| || |||| | || || ||||| | || || || || ||||| Sbjct 19895389 GGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCAACCGTGGAAAACACTCTA 19895330 Query 167924 TATGAAGATGGTGA 167937 | ||| || ||||| Sbjct 19895329 TTTGAGGACGGTGA 19895316 >seq2 Length=39559433 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 167300 TTTGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 167359 |||||| | |||| |||||| | | | ||||| ||||| ||||| || |||||||| Sbjct 8166110 TTTGATATTATGGACGACTGGTTACGAAGAGACCGTTTTGTTTTTGTAGGATGGTCTGGC 8166051 Query 167360 TTACTTCTTTTTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 167419 || | |||||||| ||||||| | || | || || ||| |||| || || || ||| Sbjct 8166050 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 8165991 Query 167420 GTTACGAGCTGGTATACCCACGGGTTGGCG 167449 || || ||||||||||| || |||||| Sbjct 8165990 GTAACTTCTTGGTATACCCATGGATTGGCG 8165961 Score = 84.2 bits (92), Expect = 2e-11 Identities = 174/254 (69%), Gaps = 9/254 (4%) Strand=Plus/Plus Query 167310 TGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTT 167369 ||||||||||| | | | | |||| ||||| ||| | | || ||| | | | |||| Sbjct 19905530 TGGATGACTGGTTAAGAAGGGACCATTTTGTTTTT-TATGATGATCTAGCGTTTTGCTTT 19905588 Query 167370 TTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACGTTTGTTACGAGCT 167429 |||| ||||||| | || | || || ||| |||| || || || ||||| || | Sbjct 19905589 TTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTT 19905648 Query 167430 GGTATACCCACGGGTTGGCGTCTAGTTAC--CTTG--AGGGTGCTAATTTTCTCACGGCA 167485 |||||||||| || |||||| |||| | ||| ||| ||| ||||| | || ||| Sbjct 19905649 GGTATACCCATGGATTGGCG---AGTTCCTATTTGGAAGGTTGC-AATTTCTTAACCGCA 19905704 Query 167486 GCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAG 167545 ||||| || || ||||| | | | | || ||| | | ||||| ||||| || || Sbjct 19905705 GCAGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCAGAA 19905764 Query 167546 TCTCAGGGGGATTT 167559 | || |||||||| Sbjct 19905765 GCACAAGGGGATTT 19905778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567231914915200