Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3 95.1 1e-14 seq11 87.8 2e-12 seq6 87.8 2e-12 seq5 87.8 2e-12 seq2 87.8 2e-12 seq12 86.0 7e-12 seq10 84.2 2e-11 seq7 84.2 2e-11 seq4 82.4 9e-11 >seq3 Length=38925377 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/108 (81%), Gaps = 3/108 (3%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 36831345 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 36831404 Query 126324 TGGGTTCGAACCCCACACCTGACA-AATTATTATTGGAATTTTTGTTG 126370 ||||||| || ||||| |||||| || | |||| | | ||||| ||| Sbjct 36831405 TGGGTTCAAATCCCACTTCTGACATAAATTTTATCGTATTTTTTTTTG 36831452 Score = 93.3 bits (102), Expect = 5e-14 Identities = 74/88 (84%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGA 126320 ||||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | Sbjct 3061351 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGG 3061410 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| || ||||| ||||||| Sbjct 3061411 GCGTGGGTTCAAATCCCACTTCTGACAA 3061438 >seq11 Length=28494620 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/104 (80%), Gaps = 4/104 (4%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 1001761 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 1001820 Query 126324 TGGGTTCGAACCCCACACCTGACA--AATTATTATTGGAATTTT 126365 ||||||| || ||||| |||||| | || ||||| ||||| Sbjct 1001821 TGGGTTCAAATCCCACTTCTGACATGATTTTTTATTATTATTTT 1001864 >seq6 Length=34615992 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 27466251 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 27466192 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 27466191 GTGGGTTCAAATCCCACTTCTGACA 27466167 >seq5 Length=31082981 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/90 (82%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 22700031 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 22700088 Query 126328 TTCGAACCCCACACCTGACAAATTATTATT 126357 ||| || |||||| ||| ||| ||||| || Sbjct 22700089 TTCAAATCCCACAGCTGTCAATTTATTTTT 22700118 >seq2 Length=39559433 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 38949733 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 38949674 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 38949673 GTGGGTTCAAATCCCACTTCTGACA 38949649 Score = 82.4 bits (90), Expect = 9e-11 Identities = 79/98 (81%), Gaps = 5/98 (5%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 21993992 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 21993935 Query 126328 TTCGAACCCCACACCTGACAA-ATTATTATTGGAATTT 126364 ||| || |||||| ||| ||| ||||| || ||||| Sbjct 21993934 TTCAAATCCCACAGCTGTCAATTTTATTTTT--AATTT 21993899 >seq12 Length=27944835 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 1008599 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 1008658 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 1008659 TGGGTTCAAATCCCACTTCTGACA 1008682 >seq10 Length=25992119 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/85 (82%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| | || || | || Sbjct 18274495 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGCCCTCTAACGAGGGC 18274436 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 18274435 GTGGGTTCAAATCCCACTTCTGACA 18274411 >seq7 Length=31244610 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/85 (82%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| |||||||||| |||||||||||||| | ||| |||||| | || || | || Sbjct 7345302 AGTCAGGATGGCCGAGTGATCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 7345361 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 7345362 GTGGGTTCAAATCCCACTTCTGACA 7345386 >seq4 Length=33711903 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/91 (81%), Gaps = 3/91 (3%) Strand=Plus/Minus Query 126258 TATTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCG 126317 ||||| | | ||| |||||||||||||||||||||||||||||| | |||||| || Sbjct 18209368 TATTT-CTGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAA 18209312 Query 126318 GGAGCGTGGGTTCGAACCCCACACCTGACAA 126348 | |||||||||| || |||||| ||| ||| Sbjct 18209311 AGGGCGTGGGTTCAAATCCCACAGCTGTCAA 18209281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860716470880