Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq2 100 2e-16 >seq2 Length=39559433 Score = 100 bits (110), Expect = 2e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || | || ||||| ||||| || ||||| ||| | | Sbjct 31556373 ATGCAGATCTTTGTGAAGACTCTGACTGGCAAGACCATAACTCTGGAAGTGGAGAGCTCT 31556314 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || || | | | || | ||| |||||| || || ||||| | ||||| || Sbjct 31556313 GACACCATCGACAATGTCAAGGCAAAAATCCAGGACAAGGAGGGCATCCCACCTG---AC 31556257 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || ||||| || ||||||||||| || ||||| || ||| || ||||||||||| Sbjct 31556256 CAGCAGAGGCTCATCTTTGCTGGGAAGCAACTGGAGGATGGGCGCACATTGGCCGATTAC 31556197 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||||||||| ||||| |||||| |||| | ||| | || ||||| Sbjct 31556196 AACATTCAGAAGGAGTCTACCCTTCATTTGGTCCTCCGTCTTCGTGGAGG 31556147 Score = 82.4 bits (90), Expect = 5e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || ||||| |||||||||||||| || || ||||| ||| | || |||| || ||| Sbjct 31556484 CAGCAGAGGCTTATCTTTGCTGGAAAGCAGCTAGAGGATGGACGCACATTGGCTGACTAC 31556425 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || |||||||| ||||||||||| |||| | || | |||||||| Sbjct 31556424 AACATCCAGAAGGAGTCTACTCTTCACTTGGTCCTCCGCCTCCGAGGAGG 31556375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358124747624248