Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq6 381 1e-100 >seq6 Length=34615992 Score = 381 bits (422), Expect = 1e-100 Identities = 529/733 (72%), Gaps = 26/733 (4%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||| ||||| |||||||| || |||||||| ||| ||||||||||| Sbjct 8273411 CTCGCCTTCTTCGCTGCCTCCGACGGCATCGTGCTCGAGAACCTCGCCTCCAGGTTCATG 8273352 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || |||||| | ||||| ||| ||||||||| |||||||| ||||| |||||| Sbjct 8273351 TCCGACGTGCAGGTCGCCGAGGCACGCGCCTTCTACGGATTCCAGATCGCCATCGAGAAC 8273292 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| ||| ||||| | |||||| | || ||||||| || || |||| Sbjct 8273291 ATCCACTCCGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGACGCCGAGAAG 8273232 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 || | || ||| ||||| || || | ||| | || ||||| || ||||| Sbjct 8273231 GACCGCCTCTTCCGCGCCATCGACACCGTCCCCGCCGTCCGCCGCAAGGCTGAATGGGCC 8273172 Query 42663 CTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 | ||||||||| | ||| ||| |||| |||| | || || ||||| | Sbjct 8273171 ATGCGCTGGATCGACGGCGGCGAGCGC----TTCGCCGAGCGCCTCGTCGCCTTCGCTTG 8273116 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781 ||||||||| |||||||||||||| ||||| | ||||||| ||||||||| || || Sbjct 8273115 CGTCGAGGGGATCTTCTTCTCGGGTTCCTTCTGCGCCATCTTTTGGCTCAAGAAGCGGGG 8273056 Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841 ||||| || ||||||||||| ||||| |||||| | | |||||||| ||||| | Sbjct 8273055 CCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTG 8272996 Query 42842 GGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCGG 42899 ||||| ||||||||||| | | || | |||| | ||||| |||| ||| || Sbjct 8272995 CGACTTCGCCTGCCTCCTATAC--GAACT-CCTCCGCGGCAAGC--TCGACGAGGCCCGT 8272941 Query 42900 GTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTG 42959 ||||| | ||| || | || ||||| || ||||||| ||||||| || | |||| Sbjct 8272940 GTCCGCGAGATCGTCGCCGACGCCGTCGACATCGAGAGGGAGTTCGTCTGCGACGCGCTC 8272881 Query 42960 CCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCC 43019 ||||| | || |||||||||||| |||||||||| || |||||||| ||| ||||||| Sbjct 8272880 CCCGTCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGCC 8272821 Query 43020 GACCATCTCCTGTGCCAGATGGGTCTCAGCCGCC------TCTACAACA-CGCCGTGCCC 43072 |||| ||||| |||| ||| || || | |||||| |||| ||| Sbjct 8272820 GACCGCCTCCTC------ATGGCGCTCGGCTGCAAGAAGATGTACAACGTCGCCAA-CCC 8272768 Query 43073 CTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGT 43132 ||||||| |||||| |||||| || |||||||||||||||| |||||||||||||| Sbjct 8272767 TTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGT 8272708 Query 43133 CGCCGACTACCAG 43145 || |||||||||| Sbjct 8272707 CGGCGACTACCAG 8272695 Score = 345 bits (382), Expect = 8e-90 Identities = 520/728 (71%), Gaps = 16/728 (2%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||| ||||| || ||||| || |||||||| ||| ||||||||||| Sbjct 933456 CTCGCCTTCTTCGCGGCCTCCGATGGCATTGTGCTCGAGAACCTCGCCTCCAGGTTCATG 933515 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || |||||| | ||||| ||| ||||| || |||||||| ||||| |||||| Sbjct 933516 TCCGACGTGCAGGTCGCCGAGGCACGCGCGTTCTATGGATTCCAGATCGCCATCGAGAAC 933575 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| ||| ||||| | |||||| | || ||||||| || ||||||| Sbjct 933576 ATCCACTCGGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGACGTCGAGAAG 933635 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 | | || ||| ||||| || || | ||| | | ||||| |||||||| Sbjct 933636 GATCGCCTCTTCCGCGCCATCGACACCGTCCCCGCCGTGCGCCGCAAGGCTGACTGGGCC 933695 Query 42663 CTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 | |||||||| | ||| ||| |||| |||| | || || ||||| || Sbjct 933696 ATGCGGTGGATCGACGGCGGCGAGCGC----TTCGCCGAGCGCCTCGTGGCCTTCGCCTG 933751 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781 ||||||||| ||||||||||||||| | ||| | ||||||||||||||||| || || Sbjct 933752 CGTCGAGGGGATCTTCTTCTCGGGCTCATTCTGCGCCATCTTCTGGCTCAAGAAGCGGGG 933811 Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841 ||||| || ||||||||||| ||||| |||||| | | |||||||| || || | Sbjct 933812 ACTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTCTCCACTG 933871 Query 42842 GGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCGG 42899 ||||| || |||||||| | ||| || |||| | |||| ||||| ||| ||| Sbjct 933872 CGACTTCGCTTGCCTCCTCT--ACGA-CCTCCTCCGCGGCAAG--CTCGATGAGGCGCGC 933926 Query 42900 GTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTG 42959 |||| | |||| || | || ||||| || ||||||| ||||||| || | |||| Sbjct 933927 GTCCAAGACATCGTCGCCGACGCCGTCGACATCGAGAGGGAGTTCGTCTGCGATGCGCTC 933986 Query 42960 CCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCC 43019 ||||| | || ||||| |||||| ||| |||||| || |||||||| ||| ||||||| Sbjct 933987 CCCGTCGCGCTCGTCGGGATGAACGGCGAGCTCATGAGCCAGTACATCGAGTTCGTCGCC 934046 Query 43020 GACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAA-CACGCCGTGCCCCTTCG 43077 |||| || || || | | | || || | ||||| |||| ||| |||| Sbjct 934047 GACCGGCTGCTCATGGC-GCTCGGATGCAAGAAGATGTACAATGTCGCC-AACCCGTTCG 934104 Query 43078 ACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCG 43137 ||| |||||| |||||| || |||||||||||||||| ||||||||||| |||| || Sbjct 934105 ACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGCG 934164 Query 43138 ACTACCAG 43145 |||||||| Sbjct 934165 ACTACCAG 934172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944339058349120