Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq5 95.1 1e-14 seq2 95.1 1e-14 seq6 84.2 2e-11 seq4 84.2 2e-11 seq1 84.2 2e-11 >seq5 Length=31082981 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || |||| ||||| || || || ||| ||||||||||||||||||||| ||| Sbjct 9801367 CCACCCCTGAGCCTTAGCACGAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAATCAGCC 9801426 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || || |||| || | ||||||||||| || || ||||||||||| ||| || Sbjct 9801427 AGAGTG-CGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGG 9801485 Query 34020 CACGCTCTCTTTGTCCATAATTTT 34043 | || ||| |||||| ||| || Sbjct 9801486 GATGCCCTCCTTGTCCTGAATCTT 9801509 Score = 91.5 bits (100), Expect = 1e-13 Identities = 105/140 (75%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || | ||| ||||||||||||||||||||||| || || Sbjct 9800929 AGACGGAGCACCAGGTGCAAAGTGGATTCCTTCTGAATGTTGTAATCTGCTAAGGTGCGG 9800988 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | |||||||| ||||| |||||||||||||||||| || | || || Sbjct 9800989 CCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCCGGGGGAATGCCTTCC 9801048 Query 34030 TTGTCCATAATTTTTTGCTT 34049 |||||| | | | ||||||| Sbjct 9801049 TTGTCC-TGAATCTTTGCTT 9801067 Score = 87.8 bits (96), Expect = 1e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || || || || |||||||| || || ||| |||||||||||||||||| || || Sbjct 26220362 ACCACCCCTGAGGCGGAGCACCAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGC 26220303 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 || || || | || |||| |||||||| || || |||||||||||||| ||| | Sbjct 26220302 -AAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGG 26220244 Query 34019 GCACGCTCTCTTTGTCC 34035 | | || || |||||| Sbjct 26220243 GGATGCCTTCCTTGTCC 26220227 >seq2 Length=39559433 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || || || |||| |||||| || ||||||||||||||||||||| ||| Sbjct 31556147 CCTCCACGAAGACGGAGGACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGCC 31556206 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 ||| ||| | || |||| |||||| || ||||| || || | |||||| || || Sbjct 31556207 AATGTGCGCCCATCCTCCAGTTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCAGGTGGG 31556266 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGAT-TC 34076 | || ||| |||||| |||||| ||| || | || | | |||| || | || Sbjct 31556267 ATGCCCTCCTTGTCCTGGATTTTTGCCTTGACATTG---TCGATGGTGTCAG-AGCTCTC 31556322 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| | ||||| || || || || || || ||||||||||| ||||| Sbjct 31556323 CACTTCCAGAGTTATGGTCTTGCCAGTCAGAGTCTTCACAAAGATCTGCAT 31556373 >seq6 Length=34615992 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/221 (69%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || | ||| ||||||||| |||||||| ||||| | || Sbjct 31537540 AGGCGGAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGGGTACGG 31537599 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | ||||||||||| || |||| ||||||||| ||| || | || || Sbjct 31537600 CCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCTTCC 31537659 Query 34030 TTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTCGCATTCGACC 34086 |||||| ||| || ||| || | || | |||||| ||| || || | | Sbjct 31537660 TTGTCCTGAATCTTCGCCTTCACATTG---TCGATCGTATCAGAAGACTCAACCTCAAGC 31537716 Query 34087 GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || || ||||| || || || |||||||||||||| Sbjct 31537717 GTAATGGTCTTGCCGGTCAGGGTCTTGACAAAGATTTGCAT 31537757 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || || || || || || || ||| ||||||||| ||||||||||| || Sbjct 31537987 CCTCCCCTGAGGCGAAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGCG 31538046 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || || | ||||||||| ||||| || || || ||||| || || Sbjct 31538047 AGGGTGCGACCATCCTCTAGTTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCAGGTGGA 31538106 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACT---ATCAGTAGATTCG 34077 | || ||| |||||| ||| || ||| | | | || | ||||| || || Sbjct 31538107 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGAC---ATTGTCAATTGTATCAGACGACTCA 31538163 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || ||||| ||||| ||||||||||| ||||| Sbjct 31538164 ACCTCGAGGGTGATGGTCTTGCCGGTAAGTGTCTTCACAAAGATCTGCAT 31538213 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/137 (74%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| || |||| ||||| ||||| || ||| |||||||| ||||||||||| | Sbjct 32009925 ACCTCCCCTGAGCCTGAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATC-GG 32009867 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 ||| || || |||| |||| |||||||| || || || || |||||||| || | Sbjct 32009866 CAAGGGTACGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGG 32009807 Query 34019 GCACGCTCTCTTTGTCC 34035 | | || ||| |||||| Sbjct 32009806 GGATGCCCTCCTTGTCC 32009790 >seq4 Length=33711903 Score = 84.2 bits (92), Expect = 2e-11 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | || ||||| || || || || ||| ||||||||| |||||||| ||||| Sbjct 30264966 ACCTCCACGAAGGCGCAGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGC 30264907 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || || | || || | |||||||||||||| || |||||||||||||| Sbjct 30264906 -AAGGGTACGTCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGATC 30264853 >seq1 Length=46096743 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||| || || ||||| ||||||||| |||||||| || |||| || Sbjct 27626565 AGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGT 27626506 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 ||||| |||| ||||||||||| || || || |||||||| ||| ||| | | ||| Sbjct 27626505 TCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCC 27626446 Query 34030 TTGTCC 34035 |||||| Sbjct 27626445 TTGTCC 27626440 Score = 82.4 bits (90), Expect = 6e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || || ||| ||||||||| |||||||| || || | ||| Sbjct 12788221 AGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGC 12788280 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 |||| |||| ||||||||||| || || ||||||||||| ||| Sbjct 12788281 CCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCC 12788325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397062341929624