Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq6 156 9e-33 >seq6 Length=34615992 Score = 156 bits (172), Expect = 9e-33 Identities = 306/450 (68%), Gaps = 2/450 (0%) Strand=Plus/Minus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || ||||| |||||||||| | ||||| || || || | || || || ||| Sbjct 8273144 TTCGCCGAGCGCCTCGTCGCCTTCGCTTGCGTCGAGGGGATCTTCTTCTCGGGTTCCTTC 8273085 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||||||||||||||||| ||| || | ||||| |||||| | || |||||| Sbjct 8273084 TGCGCCATCTTTTGGCTCAAGAAGCGGGGCCTCATGCCGGGCCTCACCTTCTCCAACGAG 8273025 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTC 243468 ||||| |||||||||||||| ||| | |||| || | || | ||| Sbjct 8273024 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTATACGAACTCCTC 8272965 Query 243469 CAGAACAAGCTACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAACGA 243527 | |||||| | | | || ||| | ||| || | || || || || | ||| Sbjct 8272964 CGCGGCAAGCT-CGACGAGGCCCGTGTCCGCGAGATCGTCGCCGACGCCGTCGACATCGA 8272906 Query 243528 AAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCAT 243587 | ||| ||| | |||||||| | || | ||| | ||||||||| || ||||| Sbjct 8272905 GAGGGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGACCTCAT 8272846 Query 243588 GGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGT 243647 | | ||||||||||| ||||| ||||||||| | |||| ||||| || | |||| | Sbjct 8272845 GAGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCATGGCGCTCGGCTGCAAGAAGAT 8272786 Query 243648 GTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAA 243707 ||||||| | ||||| || | || ||||||||||| || || || || || || || Sbjct 8272785 GTACAACGTCGCCAACCCTTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAA 8272726 Query 243708 CTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||||||||| ||||| ||| | || || || Sbjct 8272725 CTTCTTCGAGAAGCGCGTCGGCGACTACCA 8272696 Score = 141 bits (156), Expect = 2e-28 Identities = 303/450 (67%), Gaps = 2/450 (0%) Strand=Plus/Plus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || ||||| ||||| |||| | ||||| || || || | || || || ||| Sbjct 933723 TTCGCCGAGCGCCTCGTGGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCATTC 933782 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||||||||||| ||||| ||| || | ||||| |||||| | || |||||| Sbjct 933783 TGCGCCATCTTCTGGCTCAAGAAGCGGGGACTCATGCCGGGCCTCACCTTCTCCAACGAG 933842 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTC 243468 ||||| ||||||||||| || ||| | |||| | || | || ||| Sbjct 933843 CTCATCTCCCGCGACGAGGGTCTCCACTGCGACTTCGCTTGCCTCCTCTACGACCTCCTC 933902 Query 243469 CAGAACAAGCTACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAACGA 243527 | |||||| | || | || ||| || | ||| || | || || || || | ||| Sbjct 933903 CGCGGCAAGCT-CGATGAGGCGCGCGTCCAAGACATCGTCGCCGACGCCGTCGACATCGA 933961 Query 243528 AAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCAT 243587 | ||| ||| | ||||| || | || | ||| | || |||||| || ||||| Sbjct 933962 GAGGGAGTTCGTCTGCGATGCGCTCCCCGTCGCGCTCGTCGGGATGAACGGCGAGCTCAT 934021 Query 243588 GGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGT 243647 | | ||||||||||| ||||| |||||||| | |||| ||||| || | |||| | Sbjct 934022 GAGCCAGTACATCGAGTTCGTCGCCGACCGGCTGCTCATGGCGCTCGGATGCAAGAAGAT 934081 Query 243648 GTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAA 243707 |||||| | ||||| || | || ||||||||||| || || || || || || || Sbjct 934082 GTACAATGTCGCCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAA 934141 Query 243708 CTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||||||||| ||||||||| | || || || Sbjct 934142 CTTCTTCGAGAAGCGTGTCGGCGACTACCA 934171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879830432200