Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq6 165 1e-35 >seq6 Length=34615992 Score = 165 bits (182), Expect = 1e-35 Identities = 317/457 (69%), Gaps = 18/457 (4%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| || || ||||||||||||||||| ||||| || | || | ||| |||||| Sbjct 934169 GTAGTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 934110 Query 125818 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 125872 | || || ||||| | ||| | || || ||| || || | | |||| Sbjct 934109 CCAGTCGAACGGGTTGGCGACATTG---TACATCTTCTTG-CATCCGAG-CGCCATGAGC 934055 Query 125873 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG- 125931 || || || | |||| |||| ||||||| ||| ||| |||||| |||| ||| Sbjct 934054 AGCCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGCTCGCCGTTCATCCCGACGAGC 933995 Query 125932 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGAT 125991 | || |||||||| || ||| |||| || |||| || || ||||| || ||||| Sbjct 933994 GCGACG-GGGAGCGCATCGCAGACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGAT 933936 Query 125992 GGCGTGAATGGTGTCCACCCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGC 126048 | | || | | || | | | | ||| | | ||| | || ||| || | | Sbjct 933935 GTCTTGGACGCGCGCCTCATCGAGCTTGCCGCGGAGGAGGTCGTAGAGGAGG--CAAG-C 933879 Query 126049 AAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGG 126108 || || ||||||||||||||| ||||||||||| || || |||||| || || || Sbjct 933878 GAAGTCGCAGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGG 933819 Query 126109 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCC 126168 |||||| ||||||||||| | |||||| || || || ||||| |||||||||||||| || Sbjct 933818 CATGAGTCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAATGAGCCCGAGAAGAAGATCCC 933759 Query 126169 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 ||| || || ||||| || | ||| ||||| || ||| Sbjct 933758 CTCGACGCAGGCGAAGGCCACGAGGCGCTCGGCGAAG 933722 Score = 149 bits (164), Expect = 7e-31 Identities = 311/455 (68%), Gaps = 14/455 (3%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| || || ||||||||||||||||| ||||| || | || | ||| |||||| Sbjct 8272698 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 8272757 Query 125818 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 125872 | || || ||||| | ||| | || || ||| || || | | ||||| Sbjct 8272758 CCAGTCGAAAGGGTTGGCGACGTTG---TACATCTTCTTG-CAGCCGAG-CGCCATGAGG 8272812 Query 125873 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG- 125931 || || || | |||| |||| ||||||| ||| || |||||| |||| ||| Sbjct 8272813 AGGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGC 8272872 Query 125932 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGAT 125991 | || ||||||||||| ||| |||| || |||| || || ||||| || ||||| Sbjct 8272873 GCGACG-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGAT 8272931 Query 125992 GGCGTGAATGGTGTCCACCCCAGGTCTATTGCGCAA-AGTCTTGAAGAGTTCCACGGCAA 126050 || | | | || | | | | ||| | ||| | | | || ||| | Sbjct 8272932 CTCGCGGACACGGGCCTCGTCGAGCTTGCCGCGGAGGAGT-TCGTATAGGAGGCAGGCGA 8272990 Query 126051 ACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCA 126110 | || ||| || |||||||| ||||||||||| || || |||||| || || |||| Sbjct 8272991 AGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCA 8273050 Query 126111 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCT 126170 |||| ||||||||||| | ||| || || || || || ||||||||||||||||| |||| Sbjct 8273051 TGAGGCCCCGCTTCTTGAGCCAAAAGATGGCGCAGAAGGAACCCGAGAAGAAGATCCCCT 8273110 Query 126171 CCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 | || || ||||| || | ||| ||||| || ||| Sbjct 8273111 CGACGCAAGCGAAGGCGACGAGGCGCTCGGCGAAG 8273145 Score = 127 bits (140), Expect = 2e-24 Identities = 282/418 (67%), Gaps = 4/418 (1%) Strand=Plus/Plus Query 10775 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 10834 ||||||| || ||||| || | |||||||| || || || |||| || | ||| Sbjct 34192648 ACGGTGACCTGGCGATCGAACCTCCCTGGGCGAAGAAGCGCCGCGTCGAGCACATCGGGC 34192707 Query 10835 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 10894 | ||| ||||| |||| |||| || || | | |||| ||||||||||| ||| Sbjct 34192708 CTGTTTGTCGCGGCGAGCACAATGACACCGCTGTTCCCGGCAAATCCATCCATCTCCGTC 34192767 Query 10895 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCA-TTCGCGGGCATACCACCCGCACTGCG 10953 ||||| || |||||||| || || | |||||| ||| | | | | || || | || Sbjct 34192768 AAGAGCTGGTTGATGGTCTGCTCCCTCTCATCATTTCCCCCTCCGAGC-CCAGCGCCACG 34192826 Query 10954 TTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGC 11013 ||| | |||||||| ||||| ||||| ||||| ||||| || || || | ||| Sbjct 34192827 CTGCCTCCCGACGGCATCAATCTCATCAATGAAGACGATGCAAGGGGCCTTGGCCTTGGC 34192886 Query 11014 AACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATT 11073 || || | |||| ||| || ||| |||||||| || |||| || || || | Sbjct 34192887 CTTCTCGAACAGGTCTCTGACCCTGGAGGCGCCGACACCGACGAACAGCTCGACGAACTC 34192946 Query 11074 GGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAG 11133 || ||||| || || |||||| || || || ||||||| ||| || || || || Sbjct 34192947 GGAGGCGGCGCAGGAGAAGAAGGGCACTCCGGCCTCCCCCGCGACGGCACGCGCCAGCAG 34193006 Query 11134 GGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGT-GGGATCCTGGCACC 11190 ||||| || || || || || |||| | |||| | | | |||||| |||| || Sbjct 34193007 TGTCTTGCCGGTTCCGGGCGGGCCGACGAGCA-GGCATCCCTTGGGGATCTTGGCCCC 34193063 Score = 127 bits (140), Expect = 2e-24 Identities = 282/418 (67%), Gaps = 4/418 (1%) Strand=Plus/Plus Query 10775 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 10834 ||||||| || ||||| || | |||||||| || || || |||| || | ||| Sbjct 34198966 ACGGTGACCTGGCGATCGAACCTCCCTGGGCGAAGAAGCGCCGCGTCGAGCACATCGGGC 34199025 Query 10835 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 10894 | ||| ||||| |||| |||| || || | | |||| ||||||||||| ||| Sbjct 34199026 CTGTTTGTCGCGGCGAGCACAATGACACCGCTGTTCCCGGCAAATCCATCCATCTCCGTC 34199085 Query 10895 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCA-TTCGCGGGCATACCACCCGCACTGCG 10953 ||||| || |||||||| || || | |||||| ||| | | | | || || | || Sbjct 34199086 AAGAGCTGGTTGATGGTCTGCTCCCTCTCATCATTTCCCCCTCCGAGC-CCAGCGCCACG 34199144 Query 10954 TTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGC 11013 ||| | |||||||| ||||| ||||| ||||| ||||| || || || | ||| Sbjct 34199145 CTGCCTCCCGACGGCATCAATCTCATCAATGAAGACGATGCAAGGGGCCTTGGCCTTGGC 34199204 Query 11014 AACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATT 11073 || || | |||| ||| || ||| |||||||| || |||| || || || | Sbjct 34199205 CTTCTCGAACAGGTCTCTGACCCTGGAGGCGCCGACACCGACGAACAGCTCGACGAACTC 34199264 Query 11074 GGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAG 11133 || ||||| || || |||||| || || || ||||||| ||| || || || || Sbjct 34199265 GGAGGCGGCGCAGGAGAAGAAGGGCACTCCGGCCTCCCCCGCGACGGCACGCGCCAGCAG 34199324 Query 11134 GGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGT-GGGATCCTGGCACC 11190 ||||| || || || || || |||| | |||| | | | |||||| |||| || Sbjct 34199325 TGTCTTGCCGGTTCCGGGCGGGCCGACGAGCA-GGCATCCCTTGGGGATCTTGGCCCC 34199381 Score = 89.7 bits (98), Expect = 6e-13 Identities = 194/285 (68%), Gaps = 8/285 (3%) Strand=Plus/Plus Query 10790 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 10849 ||||| || || || | ||| | ||| || ||||||||| | ||| || || || Sbjct 31291560 TCAAAACGTCCAGGTCTGAGTAAAGCGGAATCCAGGATATCAGCCCTGTTGGTGGCAGCA 31291619 Query 10850 ATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 10909 || |||| ||| || || | ||||| |||||||||||||||| | ||||| | Sbjct 31291620 ATAACAATGATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAGTAACTGATTCAAA 31291679 Query 10910 GTTTGTTCGCGTTCATCATT--CGCGGGC-ATACCACCCGCACTGCGTTGCTTACCGACG 10966 |||||||| | ||||||||| | | | ||||| | | || |||| | || || Sbjct 31291680 GTTTGTTCCCTTTCATCATTTCCACCACCAATACCTGTCCCCCT---TTGCCTTCCAACA 31291736 Query 10967 GCGTCAATTTCATCGATGAAAACGATACACGGTTGATT-TTCACGGGCAACTTCAAAGAT 11025 || ||||||||||| | || || || || || ||| | | | | ||| ||| | Sbjct 31291737 GCATCAATTTCATCAACAAATACTATGCAAGGGGCATTCTCCTTTGCCTTCTTGAAA-AG 31291795 Query 11026 ATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAA 11070 ||| || || | |||||| || ||||||||||| |||||||| Sbjct 31291796 ATCACGAACACGGGAGGCACCAACTCCCACAAACATCTCCACAAA 31291840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353510396960