Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq6 127 2e-24 seq1 123 3e-23 seq2 120 3e-22 seq5 116 4e-21 seq4 113 5e-20 >seq6 Length=34615992 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| || | |||| |||||| || || |||||||| || || || || | || || Sbjct 32010591 CACCAAGTGGAGTGTGGACTCCTTCTGGATGTTGTAATCCGCAAGGGTACGGCCATCCTC 32010532 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||||||||| ||||| || ||||||||||| | || | || |||||||||| Sbjct 32010531 AAGCTGCTTACCAGCAAATATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 32010472 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 ||| || || | | | | |||||| ||| || || || | |||||||| || Sbjct 32010471 GATCTTCGCCTTCACATTGTCAATAGTGTCGGACGACTCAACCTCAAGGGTGATGGTCTT 32010412 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || || ||||| |||||||| ||||| Sbjct 32010411 GCCAGTCAGGGTCTTGACAAAGATCTGCAT 32010382 Score = 125 bits (138), Expect = 8e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| || | ||| |||||| || || ||||| ||||| || || || |||| || Sbjct 32010135 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCGTCCTC 32010076 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 ||||||||| |||||||| ||||| ||||||||||| | || | || ||||||||| Sbjct 32010075 TAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTG 32010016 Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 ||| || || | ||| | | | |||||| || || || |||| ||||||||| | Sbjct 32010015 GATCTTGGCCTTCA-CGTTGTCGATCGTGTCTGAGGACTCGACCTCGAGCGTGATGGTCT 32009957 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || || ||||| || ||||| ||||| Sbjct 32009956 TGCCAGTCAGGGTCTTGACGAAGATCTGCAT 32009926 Score = 123 bits (136), Expect = 3e-23 Identities = 144/192 (75%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || |||||||| || || || || |||| || |||||||| |||||||| Sbjct 32009888 TCCTTCTGGATGTTGTAATCGGCAAGGGTACGGCCGTCCTCCAGCTGCTTGCCAGCGAAG 32009829 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| ||||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 32009828 ATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTT 32009770 Query 42138 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | ||||| ||| || || |||| |||||||| ||||| || || ||||| || Sbjct 32009769 GTCAATGGTGTCAGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 32009710 Query 42197 AAAGATTTGCAT 42208 ||||| ||||| Sbjct 32009709 GAAGATCTGCAT 32009698 Score = 122 bits (134), Expect = 9e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || ||||| || || | || || |||||||| |||||||| Sbjct 32009433 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAA 32009374 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | || |||||||||| ||| || |||| | Sbjct 32009373 GATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 32009314 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||| || || || |||| |||||||||||||| || || ||||| || Sbjct 32009313 GTCAATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTTTTGCCGGTGAGGGTCTTCAC 32009254 Query 42197 AAAGATTTGCAT 42208 |||||| ||||| Sbjct 32009253 AAAGATCTGCAT 32009242 Score = 113 bits (124), Expect = 5e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||| | ||| | ||| |||||| || || ||||| || ||||| || || |||| || Sbjct 32009679 CACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTC 32009620 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| |||||||| ||||| ||||||||||| | || | || |||||||||| Sbjct 32009619 CAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTG 32009560 Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 ||| || |||| ||| | | | ||||| ||| || || || | |||||||| | Sbjct 32009559 GATCTTGGCCTTGA-CGTTGTCAATGGTGTCAGACGACTCGACCTCAAGGGTGATGGTCT 32009501 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || | ||||| || ||||| ||||| Sbjct 32009500 TTCCAGTCAAGGTCTTCACGAAGATCTGCAT 32009470 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| |||||||||||||| |||| |||| || |||||||| || || || Sbjct 31537794 CTCCTTCTGAATGTTGTAATCAGCCAGGGTCCTACCGTCCTCAAGCTGCTTGCCGGCAAA 31537853 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| |||||||| || | || | | |||||||||| ||| || || | | Sbjct 31537854 GATGAGACGCTGCTGATCAGGAGGGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATT 31537913 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||| || || || || | |||||||| || || || | ||||| || Sbjct 31537914 GTCGATCGTGTCCGAGGACTCGACCTCAAGAGTGATGGTCTTTCCTGTCAAGGTCTTCAC 31537973 Query 42197 AAAGATTTGCAT 42208 |||||| ||||| Sbjct 31537974 AAAGATCTGCAT 31537985 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| ||||| ||| |||||| || || ||||| || || || || || | || || Sbjct 31537548 CACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGGGTACGGCCATCCTC 31537607 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| || ||||| || | ||||||||||| | || | || ||||||||| | Sbjct 31537608 AAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCC-T 31537666 Query 42119 GATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 || | || | || | | | | ||| || || || || || | ||| ||||| | Sbjct 31537667 GAATCTTCGCCTTCACATTGTCGATCGTATCAGAAGACTCAACCTCAAGCGTAATGGTCT 31537726 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || || ||||| |||||||||||||| Sbjct 31537727 TGCCGGTCAGGGTCTTGACAAAGATTTGCAT 31537757 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| ||||| || || || | || || |||||||| ||||| || Sbjct 32010345 CTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAA 32010286 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | | |||||||||| ||| || || | | Sbjct 32010285 GATGAGACGCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTCACATT 32010226 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||| || || || || | |||||||| ||||| || || ||||| || Sbjct 32010225 GTCGATCGTGTCCGAAGACTCAACCTCAAGTGTGATGGTCTTGCCGGTCAGGGTCTTGAC 32010166 Query 42197 AAAGATTTGCAT 42208 ||||| ||||| Sbjct 32010165 GAAGATCTGCAT 32010154 >seq1 Length=46096743 Score = 123 bits (136), Expect = 3e-23 Identities = 145/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || ||||| || || ||||| || |||||||| || ||||| Sbjct 27626539 CTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGTTCGTCCTCCAGCTGCTTGCCGGCGAA 27626480 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | | |||||||||| | || |||| | Sbjct 27626479 GATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGCACCTTCGCCTTGACGTT 27626420 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||||||| ||||| |||| ||||||||| || ||||| || ||||| || Sbjct 27626419 CTGGATCGTGTCGCTGCTCTCCACCTCGAGCGTGATGGTCTTCCCCGTCAGGGTCTTCAC 27626360 Query 42197 AAAGATTTGCATTTTC 42212 ||||| ||||| ||| Sbjct 27626359 GAAGATCTGCATCTTC 27626344 Score = 109 bits (120), Expect = 6e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| || | ||| |||||| || || ||||| || || || || ||| |||| || Sbjct 12788229 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTC 12788288 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| || ||||| ||||| ||||||||||| | || | | ||||||||| Sbjct 12788289 CAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATCCCTTCCTTGTCCTG 12788348 Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 ||| || || | ||| | | | ||||| || ||||| || | ||||||||| | Sbjct 12788349 GATCTTCGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCT 12788407 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 | ||||| || ||||| || ||||| ||||| || Sbjct 12788408 TCCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 12788441 >seq2 Length=39559433 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| ||||| || |||| | || || |||||||| || || || Sbjct 2779171 CTCCTTCTGGATGTTGTAGTCAGCGAGGGTCCTGCCATCCTCAAGCTGCTTGCCGGCAAA 2779230 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 2779231 GATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 2779289 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| |||||||| |||| |||||||| ||||| || || ||||| | Sbjct 2779290 TGTCGATGGTGTCAGAAGATTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGTGTCTTGA 2779349 Query 42196 CAAAGATTTGCAT 42208 ||||||| ||||| Sbjct 2779350 CAAAGATCTGCAT 2779362 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| ||||| || |||| | || || |||||||| |||||||| Sbjct 2778943 CTCCTTCTGGATGTTGTAGTCAGCGAGGGTCCTGCCATCCTCCAGCTGCTTGCCAGCGAA 2779002 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 2779003 GATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGA-CGT 2779061 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || || || || || |||| |||||||| ||||| || || ||||| | Sbjct 2779062 TGTCAATGGTATCAGAAGACTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGAGTCTTCA 2779121 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 2779122 CGAAGATCTGCAT 2779134 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| ||||| || |||| | || || |||||||| || ||||| Sbjct 2779399 CTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATCCTCCAGCTGCTTGCCGGCGAA 2779458 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 2779459 GATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 2779517 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || || || ||||| || | ||||| || ||||| || | ||||| | Sbjct 2779518 TGTCAATGGTATCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCCGGTCAATGTCTTCA 2779577 Query 42196 CAAAGATTTGCAT 42208 ||||||| ||||| Sbjct 2779578 CAAAGATCTGCAT 2779590 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||||||||| || || ||||| || ||||| | || ||||| ||||| ||||| || Sbjct 31556639 TCCTTTTGAATGTTATAGTCAGCGAGTGTCCGGCCATCCTCTAGTTGCTTGCCAGCAAAG 31556698 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| | ||| ||||| | || | | |||||||||| ||| || ||| | | Sbjct 31556699 ATGAGCCTCTGTTGGTCTGGGGGGATACCCTCCTTGTCCTGGATCTTGGCTTTAACATTG 31556758 Query 42138 GCCACCGTGTCG---CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194 | | |||||| ||| || ||||| | ||||| || ||||| || | ||||| Sbjct 31556759 TCAATGGTGTCGGAACTC---TCTACATCAAGAGTGATAGTCTTGCCAGTCAAAGTCTTG 31556815 Query 42195 ACAAAGATTTGCAT 42208 |||||||| ||||| Sbjct 31556816 ACAAAGATCTGCAT 31556829 Score = 93.3 bits (102), Expect = 5e-14 Identities = 137/193 (71%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| ||||| || |||| |||| || |||||||| || ||||| Sbjct 2779627 CTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCGTCCTCCAGCTGCTTGCCGGCGAA 2779686 Query 42077 T-ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG 42135 ||||| ||||||||||| | || | || |||||| || ||| || |||| Sbjct 2779687 AGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTATCTTGGATCTTAGCCTTGACAT 2779746 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| || ||||| || | ||||| || ||||| || | ||||| | Sbjct 2779747 TGTCGATGGTGTCAGAGGACTCCACCTCAAGGGTGATAGTCTTGCCAGTCAATGTCTTCA 2779806 Query 42196 CAAAGATTTGCAT 42208 ||||||| ||||| Sbjct 2779807 CAAAGATCTGCAT 2779819 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| ||||||| || || | || ||||||||||| ||||| || Sbjct 31556410 CTCCTTCTGGATGTTGTAGTCAGCCAATGTGCGTCCATCCTCTAGCTGCTTTCCAGCAAA 31556469 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || | |||||| || | ||| | | |||||||||| ||| || |||| | Sbjct 31556470 GATAAGCCTCTGCTGATCAGGTGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATT 31556529 Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | || || |||| || || || || ||||| || || || || || ||||| Sbjct 31556530 GTCAATTGTATCAGAGCTC---TCAACCTCAACTGTGATCGTCTTTCCTGTAAGGGTCTT 31556586 Query 42194 TACAAAGATTTGCAT 42208 |||||||| ||||| Sbjct 31556587 CACAAAGATCTGCAT 31556601 Score = 82.4 bits (90), Expect = 8e-11 Identities = 136/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || || | || || |||||||| || ||||| Sbjct 2778715 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 2778774 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | | ||||||||| ||| || || | | Sbjct 2778775 GATCAGACGCTGCTGGTCAGGGGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTCACATT 2778834 Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | ||||| |||| || || || | |||||||| ||||| || || ||||| Sbjct 2778835 GTCGATGGTGTCAGAGCTC---TCAACCTCCAGGGTGATGGTCTTGCCTGTGAGGGTCTT 2778891 Query 42194 TACAAAGATTTGCAT 42208 |||||||| ||||| Sbjct 2778892 GACAAAGATCTGCAT 2778906 >seq5 Length=31082981 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || |||||||| |||||||| || || |||| || |||||||| || ||||| Sbjct 9801174 CTCCTTCTGGATATTGTAGTCAGCCAGGGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAA 9801233 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | ||| | || ||||||||| ||| || || | ||| Sbjct 9801234 GATGAGGCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGGATCTTCGCCTTCA-CGT 9801292 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| || || || || | |||||||| ||||| |||| ||||| | Sbjct 9801293 TGTCGATTGTGTCTGATGACTCGACCTCTAATGTGATGGTCTTGCCAGTTAAGGTCTTGA 9801352 Query 42196 CAAAGATTTGCAT 42208 |||| || ||||| Sbjct 9801353 CAAAAATCTGCAT 9801365 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||||||||||||||| || |||| || |||||||| || ||||| Sbjct 9801402 CTCCTTCTGAATGTTGTAATCAGCCAGAGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAA 9801461 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 ||||| ||||||||||| | || | || |||||||||| ||| | || | || | Sbjct 9801462 GATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCC-TGAATCTTCGCCTTCACAT 9801520 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || ||| || || || || | ||| ||||| ||||| || || ||||| | Sbjct 9801521 TGTCGATTGTATCGGAAGACTCGACCTCAAGCGTAATGGTCTTGCCGGTCAGGGTCTTGA 9801580 Query 42196 CAAAGATTTGCAT 42208 | || || ||||| Sbjct 9801581 CGAAAATCTGCAT 9801593 Score = 105 bits (116), Expect = 7e-18 Identities = 146/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 42011 TGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACC 42070 |||| |||||| || || ||||| || || || || || | || || |||||||| || Sbjct 3229942 TGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCC 3229883 Query 42071 AGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTT 42130 ||||| ||||| ||||||||||||| || | | ||||||||| ||| || || Sbjct 3229882 GGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATCCCTTCCTTGTCCTGGATCTTGGCCTT 3229823 Query 42131 GAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCG 42189 | ||| | | | ||||| || ||||| || | ||||||||| || ||||| || | Sbjct 3229822 CA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTCCCCGTCAGGG 3229764 Query 42190 TCTTTACAAAGATTTGCATTTT 42211 |||| || ||||| ||||| || Sbjct 3229763 TCTTCACGAAGATCTGCATCTT 3229742 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| ||||| ||||| || | || || |||||||| ||||| || Sbjct 26219414 CTCCTTCTGGATGTTGTAGTCAGCAAGAGTGCGGCCATCTTCGAGCTGCTTGCCAGCAAA 26219355 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | | |||||||||| |||||| |||| | Sbjct 26219354 GATGAGACGCTGCTGGTCCGGAGGGATTCCCTCCTTGTCCTGGATTTTGGCCTTGACGTT 26219295 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | || || || || || || | || ||||| ||||| || || ||||| || Sbjct 26219294 ATCAATGGTATCCGAGGACTCAACCTCAAGGGTTATGGTCTTGCCAGTGAGAGTCTTCAC 26219235 Query 42197 AAAGATTTGCAT 42208 ||||| ||||| Sbjct 26219234 GAAGATCTGCAT 26219223 Score = 98.7 bits (108), Expect = 1e-15 Identities = 166/239 (69%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 41973 ATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTG 42032 ||||| |||| || || | || | ||||| || | ||| |||||| ||||| ||| Sbjct 26220370 ATTTACTGACCACCCCTGAGGCGGAGCACCAGGTGGAGAGTGGACTCCTTCTGAATGTTG 26220311 Query 42033 TAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGG 42092 || || || || || || | || || |||||||| |||||||| || || ||||||||| Sbjct 26220310 TAGTCGGCAAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGG 26220251 Query 42093 TCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---G 42149 || | || | || ||||||||| ||| || || | | | | ||||| | Sbjct 26220250 TCCGGGGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTCACATTATCGATGGTGTCGGAG 26220191 Query 42150 CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || || || | || ||||| ||||| || || ||||| |||||||| ||||| Sbjct 26220190 CTC---TCAACCTCCAGAGTAATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 26220135 Score = 96.9 bits (106), Expect = 4e-15 Identities = 153/218 (70%), Gaps = 11/218 (5%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||||| ||||| ||| ||||| ||||| |||||||| || | || || | Sbjct 9800931 ACGGAGCACCAGGTGCAAAGTGGATTCCTTCTGAATGTTGTAATCTGCTAAGGTGCGGCC 9800990 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| ||||| || || || |||||||| || | || | || ||||| Sbjct 9800991 ATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCCGGGGGAATGCCTTCCTT 9801050 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCAC-CGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| ||| | |||| || ||| | || |||||| ||| || || || | || | Sbjct 9801051 GTCC-TGAATCTTTGCTTTCACGTTGTCAATCGTGTCTGACGACTCAACCTCCAGGGTAA 9801109 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 |||||||||| | | ||||||||||||||| Sbjct 9801110 TGGTTTTGCCGG---------TCACAAAGATTTGCATT 9801138 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| ||||| || |||| | || || |||||||| ||||| || Sbjct 26219642 CTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATCCTCAAGCTGCTTGCCAGCAAA 26219583 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | || |||||||||| ||| ||| || | | Sbjct 26219582 GATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTAACATT 26219523 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | || || || ||||| || | ||||| || || || || | ||||| || Sbjct 26219522 GTCAATGGTATCAGAGGACTCCACCTCAAGGGTGATAGTCTTTCCGGTCAAGGTCTTGAC 26219463 Query 42197 AAAGATTTGCAT 42208 ||| |||||||| Sbjct 26219462 AAATATTTGCAT 26219451 Score = 89.7 bits (98), Expect = 6e-13 Identities = 162/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || | || | |||||| || | || |||||| || || ||||| || || Sbjct 26220134 ACCACCCCTGAGGCGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGC 26220075 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || ||||||||||||||||| ||||||| ||||||||| | || Sbjct 26220074 AAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATGAGTCTCTGCTGGTCCGGGGG 26220015 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATT 42156 | || |||||| ||| ||| || || | ||| | | | ||||| |||| | Sbjct 26220014 GATGCCCTCCTTATCCTGGATCTTCGCCTTCA-CGTTGTCGATGGTGTCTGAGCTC---T 26219959 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 | || || | || || || ||||| || || ||||| || || || |||||| Sbjct 26219958 CAACCTCCAGGGTAATAGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCATT 26219906 >seq4 Length=33711903 Score = 113 bits (124), Expect = 5e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 42006 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 42065 ||||| ||| |||||| || || || ||||| || ||||| ||| | || || |||||| Sbjct 30264485 TGCAAGGTGGACTCCTTCTGGATGTTATAATCCGCAAGAGTACGCCCATCCTCAAGCTGC 30264426 Query 42066 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTT 42125 || |||||||| || || ||||||||||| | || | || |||||||||| ||| | || Sbjct 30264425 TTGCCAGCGAAGATAAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCC-TGAATCTT 30264367 Query 42126 TG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184 | || | | | | ||| ||| || || || || | |||||||| ||||| || Sbjct 30264366 AGCCTTCACATTGTCAATCGTATCGGAGGACTCAACCTCCAAGGTGATGGTCTTGCCAGT 30264307 Query 42185 TAGCGTCTTTACAAAGATTTGCAT 42208 || ||||| ||||| || ||||| Sbjct 30264306 GAGGGTCTTAACAAATATCTGCAT 30264283 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||| ||||| ||| |||||| || || || || ||||| || || || |||| || Sbjct 30264719 ACCAGGTGCAAGGTGGACTCCTTCTGGATGTTATAGTCAGCAAGGGTGCGACCGTCCTCA 30264660 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| |||||||| ||||| ||||||||||| | || | || |||||| ||| | Sbjct 30264659 AGCTGCTTGCCAGCGAAGATGAGCCGCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGG 30264600 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || || || | | | | |||||| ||| || || || | || ||||| ||| Sbjct 30264599 ATCTTGGCCTTCACATTATCGATCGTGTCAGACGACTCGACCTCCAGGGTAATGGTCTTG 30264540 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || ||||| || || |||||||| Sbjct 30264539 CCGGTGAGGGTCTTCACGAATATTTGCAT 30264511 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 42006 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 42065 |||| ||| |||||| || || || || ||||| || || || | || || |||||| Sbjct 30265169 TGCAGGGTGGACTCCTTCTGGATGTTATAGTCAGCAAGGGTGCGGCCATCCTCGAGCTGC 30265110 Query 42066 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTT 42125 || || ||||| ||||| ||||||||||| | || | || |||||||||| ||| || Sbjct 30265109 TTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGGATCTTG 30265050 Query 42126 TGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184 || | ||| | | | ||||| || || || || | |||||||| ||||| || Sbjct 30265049 GCCTTCA-CGTTGTCGATGGTGTCAGAGGACTCAACCTCCAGAGTGATGGTCTTGCCAGT 30264991 Query 42185 TAGCGTCTTTACAAAGATTTGCAT 42208 || ||||| || ||||| ||||| Sbjct 30264990 GAGGGTCTTCACGAAGATCTGCAT 30264967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212718518080