Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq6 100 3e-16 seq2 95.1 1e-14 seq5 89.7 5e-13 >seq6 Length=34615992 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| || |||| || || ||||| ||||| || || || | Sbjct 31537531 CCACCACGGAGGCGGAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCTGCG 31537590 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| || | || || || ||| | ||||| || ||||||||||| ||| Sbjct 31537591 AGGGTACGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGA 31537650 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 |||||||| || || ||||| || || | || | || || |||||||| || Sbjct 31537651 ATGCCTTCCTTGTCCTGAATCTTCGCCTTCACATTGTCGATCGTATCAGAAGACTCAACC 31537710 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || |||| || |||||||| || || || ||||| ||||||||| Sbjct 31537711 TCAAGCGTAATGGTCTTGCCGGTCAGGGTCTTGACAAAGATTTGCATC 31537758 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| | | || || || || || || ||||| ||||| || ||||| Sbjct 31537984 ATGCCTCCCCTGAGGCGAAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCC 31538043 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | ||| || | ||| || || || | || | ||||||||||| || Sbjct 31538044 GCGAGGGTGCGACCATCCTCTAGTTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCAGGT 31538103 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| || || || ||||| || |||| || | || || || ||||| Sbjct 31538104 GGAATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATTGTATCAGACGACTCA 31538163 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || | || |||||||| || || || ||||| || |||||| Sbjct 31538164 ACCTCGAGGGTGATGGTCTTGCCGGTAAGTGTCTTCACAAAGATCTGCATC 31538214 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| || | ||| || || || || || ||||| ||||| || || ||| Sbjct 32009471 ATGCCTCCCCTGAGTCTGAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCG 32009412 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | || || || ||| | || | || |||||||| || Sbjct 32009411 GCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGG 32009352 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || ||||| || || || || || || |||| || | |||||| || ||||| Sbjct 32009351 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCCGAGGACTCA 32009292 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || | ||||||||||| || || || ||||| || |||||| Sbjct 32009291 ACCTCGAGGGTGATGGTTTTGCCGGTGAGGGTCTTCACAAAGATCTGCATC 32009241 >seq2 Length=39559433 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || || || || || ||||| ||||| || || || || ||| | ||| || Sbjct 2778925 CACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTCCTGCCATCCTC 2778984 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 || || || || ||| | || | || ||||||||||| |||||||| || || || || Sbjct 2778985 CAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 2779044 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 || || |||| || | || | ||| || ||||||||||| ||||| || | || | Sbjct 2779045 GATCTTAGCCTTGA-CGTTGTCAATGGTATCAGAAGACTCGACCTCGAGGGTGATGGTCT 2779103 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || ||||| || || || || ||||| Sbjct 2779104 TGCCAGTCAGAGTCTTCACGAAGATCTGCAT 2779134 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| | | || || || || || || ||||| ||||| || || || Sbjct 2779133 ATGCCTCCCCTGAGACGGAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCA 2779192 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | ||| || | || || || || | || | || ||||||||||| Sbjct 2779193 GCGAGGGTCCTGCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGG 2779252 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||| || || || || || || |||| || | || | |||||| ||||| || Sbjct 2779253 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGAAGATTC 2779311 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | || |||||||| || || || ||||| || ||||| Sbjct 2779312 CACCTCGAGGGTGATGGTCTTGCCGGTCAGTGTCTTGACAAAGATCTGCAT 2779362 >seq5 Length=31082981 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || | |||||| | |||||| || || ||||| ||||| |||||||| || || Sbjct 9801136 ATTCCACCCCTGAGCCTGAGCACTAGGTGAAGGGTTGACTCCTTCTGGATATTGTAGTCA 9801195 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | || || || ||| | || | || |||||||| || Sbjct 9801196 GCCAGGGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGT 9801255 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||||||||| || || || || || || | || | || | ||||| || ||||| Sbjct 9801256 GGAATGCCTTCCTTGTCCTGGATCTTCGCCTTCA-CGTTGTCGATTGTGTCTGATGACTC 9801314 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || | || | || ||||| |||| || || |||||||| ||||| Sbjct 9801315 GACCTCTAATGTGATGGTCTTGCCAGTTAAGGTCTTGACAAAAATCTGCAT 9801365 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCT 45172 || || ||||| | | ||| || |||| || |||||||| || || || ||||| ||| Sbjct 9800920 CCACCACGGAGACGGAGCACCAGGTGCAAAGTGGATTCCTTCTGAATGTTGTAATCTGCT 9800979 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 | ||| ||| || | || || || || | |||| || ||||| ||||| || Sbjct 9800980 AA-GGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCCGGGGG 9801038 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGA 45291 ||||||||| || || ||||| ||| ||| | || | || | ||||| || ||||| | Sbjct 9801039 AATGCCTTCCTTGTCCTGAATCTTTGCTTTCA-CGTTGTCAATCGTGTCTGACGACTCAA 9801097 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGT 45316 | || || |||| ||||||||||| Sbjct 9801098 CCTCCAGGGTAATGGTTTTGCCGGT 9801122 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || || || || || ||||| || || || || ||| | ||| ||| || Sbjct 26220344 CACCAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTACGGCCATCTTC 26220285 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 || || || || ||| | |||| || ||||||||||| || |||||||| || || || Sbjct 26220284 CAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTG 26220225 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || || | || | ||||||||| ||| || || ||||||| || || Sbjct 26220224 GATCTTAGCCTTCACATTATCGATGGTGTCGGAGCTCTCAACCTCCAGAGTAATGGTCTT 26220165 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || ||||| || ||||| || ||||| Sbjct 26220164 GCCAGTGAGAGTCTTGACAAAGATCTGCAT 26220135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003132199520