Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq1 500 1e-136 seq7 381 7e-101 seq12 221 2e-52 seq9 147 3e-30 >seq1 Length=46096743 Score = 500 bits (554), Expect = 1e-136 Identities = 724/1015 (71%), Gaps = 5/1015 (0%) Strand=Plus/Plus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | ||| | || || ||||| |||| || |||||||| || |||||| Sbjct 45922507 AGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGATTTTCATGAGGCTGATCC 45922566 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGT- 6381 | ||||||||| ||||| | ||| || || || || || || ||||| ||||| || Sbjct 45922567 TGAGCTGCCATCCACGCACGAATACCCTCGTTTAAAAGAATATTTTTGGTGTAGAAAGTA 45922626 Query 6382 CTCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAG 6441 ||| || || ||||| | |||||| | ||| || || ||||| |||||||| || | || Sbjct 45922627 CTCAAATTCAGGATCTTTCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACGTAG 45922686 Query 6442 GTTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAA 6501 ||| || || || || | | ||||| | |||| | ||| | || || ||||| Sbjct 45922687 GTTTAGAGCCAGGCCGACTACGCCAATAGCACTCATCCATAAACCGGTGACCGGTACAAA 45922746 Query 6502 CAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCA 6561 |||||||||||||||| |||||| |||||| || || | ||||||||| || ||||| Sbjct 45922747 TAGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATTTGGGACCA 45922806 Query 6562 GAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTT 6621 || |||||| | |||||||| ||||| || || || |||| || || | ||| || Sbjct 45922807 AAAGCGATTAACGGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGCGCG 45922866 Query 6622 GAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAAT 6681 ||| ||||||| ||||| || ||||| | ||| || || ||||| || || ||||| Sbjct 45922867 GAAGGTATTTGCACCATCACCGTCCTCAAATAGAGTGTTTTCCACAGTTGCCCCATGAAT 45922926 Query 6682 AGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAG 6741 ||| || |||| || ||||||| | | || || |||||||||||||| ||||| | Sbjct 45922927 AGCGCATAGCAGAGCCGCACCTAATACTCTGGCAACTCCCATCATATGAAATGGGTTCAA 45922986 Query 6742 CGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAA 6801 |||||| || || || || || | |||||| | ||| || ||||||||||| || ||||| Sbjct 45922987 CGTCCAATTATGAAATCCTTGGAAGAAGAGGATGAATCGAAATATCGCTGCTACGCCAAA 45923046 Query 6802 CGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAA 6861 ||||| ||||||||||| ||| ||||| || ||||| || || || | || ||||| Sbjct 45923047 ACTCGGCGAAAAGAACCAACCGGATTGTCCCAGTGGATAAATCAGGAATAAGGAAACAAA 45923106 Query 6862 GACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGA-CGTG 6920 ||||| || || ||||| || | |||||||| || || || | | || ||| || | Sbjct 45923107 AACAGCGATTGGGCCAGAGAATGAAATTGCATTATAAGGCCGCA-ATTGAACAGACCGAG 45923165 Query 6921 CGATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAA 6980 | | ||||| || || | |||||||||||| || ||||| || || ||||| || |||| Sbjct 45923166 CAAGTTCAAATTGACGTAACATGAAACCTATTAGTGCAAAAGCCCCATGGAGAGCAACAA 45923225 Query 6981 AAGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCC 7040 ||| ||| || || || | ||| ||| || ||||| || || ||||| || |||| Sbjct 45923226 AAGTCCACAGACCACCTAATTGACACCAACGAGTAAAATCCCCTTGTGCTTCCGGGCCCC 45923285 Query 7041 ATAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGA 7100 |||| || | | || ||| | | | | ||||| || || || || || || | || Sbjct 45923286 ATAGTAGCAACAAAGAGTGTGCTAAACTATTGGCAGGGGTGGAAACTGCCGCGGTTAAGA 45923345 Query 7101 AATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAG 7160 |||| || || || | ||| ||| || | || || || ||||| || || |||| Sbjct 45923346 AATTGCAACCTTCCAAATAGGAACTCGCCAATCCATGGGTATACCAAGAAGTTACAAAAG 45923405 Query 7161 TTGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCTG 7220 |||| || || | |||||| || | || | |||||| ||| || || | || || | Sbjct 45923406 TTGTCCCTGTAAACCAACCTCCTAAAGCGAAATAAGCACAAGGAAAAAGCAATAGGCCAG 45923465 Query 7221 ACCAACCAACAAAAACGAACCTATCACGCTTAAGCCAGTCATCGAGTACATCAAA 7275 |||| || | |||||| || | || | ||| |||||| || | | |||||| Sbjct 45923466 ACCATCCTA-AAAAACAAAACGGTCTCTTCTAA-CCAGTCGTCCATAATATCAAA 45923518 Score = 315 bits (348), Expect = 9e-81 Identities = 375/509 (74%), Gaps = 6/509 (1%) Strand=Plus/Plus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 ||||||||||| | |||| || ||||| |||| || |||||||| || |||||| Sbjct 13891247 AGAGCGTTGCCACGTGGC------TCCTCAGGGAATATAAGATTTTCATGAGGCTGATCC 13891300 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | ||||||||| ||||| | ||| || || || || || || ||||| ||||| ||| Sbjct 13891301 TGAGCTGCCATCCACGCACGAATACCCTCGTTTAAAAGAATATTTTTGGTGTAGAAAGTC 13891360 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGG 6442 || || || ||||| |||||||| | ||| || || ||||| |||||||| || | ||| Sbjct 13891361 TCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACGTAGG 13891420 Query 6443 TTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAAC 6502 || || || || |||| | ||||| | |||| | ||| | || || ||||| Sbjct 13891421 TTCAGAGCCAGGCCAACTACGCCAATAGCACTCATCCATAAACCGGTGACGGGTACAAAT 13891480 Query 6503 AGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCAG 6562 |||||||||||||||| |||||| |||||| || || | ||||||||| || ||||| Sbjct 13891481 AGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATTTGGGACCAA 13891540 Query 6563 AAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTG 6622 || || ||||| |||||||| ||||| || || || |||| || || | ||| || | Sbjct 13891541 AAGCGGTTAGCAGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGCGCGG 13891600 Query 6623 AAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATA 6682 || ||||||| ||||||||||| || | ||| || ||||| ||||| || || ||| Sbjct 13891601 AAGGTATTTGCACCATCACCATCTTCGAATAGAGTGTTTTCTACGGTAGCCCCATGGATA 13891660 Query 6683 GCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGC 6742 || || |||| ||| | ||||| | || || || |||||||||||||| ||||| | | Sbjct 13891661 GCGCATAGCAGAGCTGCGCCTAATACTCCGGCAACTCCCATCATATGAAATGGGTTCAAC 13891720 Query 6743 GTCCAGTTGTGGAAGCCCTGTAGGAAGAG 6771 ||||| || || || || || | ||| || Sbjct 13891721 GTCCAATTATGAAATCCTTGGAAGAAAAG 13891749 Score = 215 bits (238), Expect = 6e-51 Identities = 236/314 (75%), Gaps = 0/314 (0%) Strand=Plus/Plus Query 6536 AAGGCGATACCAAAGATCTGAGACCAGAAACGATTAGCCGTGACCATCGAATAGGTCTCC 6595 || || | ||||||||| || ||||| || |||||||| |||||||| ||||| || || Sbjct 15262443 AAAGCAACACCAAAGATTTGGGACCAAAAGCGATTAGCGGTGACCATTGAATAAGTTTCT 15262502 Query 6596 TCTTCTTGTGTAGGCTCAAACGCCTTGAAAGTATTTGATTGTTCACCATCTTCAAACAAA 6655 || |||| || || | ||| || ||| ||||||| |||||||| ||||| | | Sbjct 15262503 TCAGCTTGAGTTGGGTTAAAAGCGCGGAAGGTATTTGCACCATCACCATCCTCAAATAGA 15262562 Query 6656 GTATTCTCTACAGTAGCACCGTGAATAGCACAGAGCAATGCTCCACCTAAGATACCTGCT 6715 || || || || || || || |||||||| || |||| || | ||||| | || || Sbjct 15262563 GTGTTTTCAACGGTTGCCCCATGAATAGCGCATAGCAGAGCCGCGCCTAATACTCCGGCA 15262622 Query 6716 ACACCCATCATATGAAACGGGTTGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAG 6775 || |||||||||||||| ||||| | |||||| || || || || || | |||||| | | Sbjct 15262623 ACTCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAATCCTTGGAAGAAGAGGATG 15262682 Query 6776 AAGCGGAATATCGCTGCAACACCAAACGACGGCGCAAAGAACCAACTGGACTGTCCGAGA 6835 || || ||||||||||| || ||||| ||| ||||||||||||| ||| ||||| || Sbjct 15262683 AATCGAAATATCGCTGCTACGCCAAAACTCGGTGCAAAGAACCAACCGGATTGTCCCAGT 15262742 Query 6836 GGATACATGAGAAA 6849 ||||| || || || Sbjct 15262743 GGATAAATCAGTAA 15262756 >seq7 Length=31244610 Score = 381 bits (422), Expect = 7e-101 Identities = 378/489 (77%), Gaps = 0/489 (0%) Strand=Plus/Minus Query 7534 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAG 7593 |||||| ||||| ||||||||||||||||||||||| |||||||| |||||||| ||||| Sbjct 14634809 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 14634750 Query 7594 ACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGAT 7653 | ||||||||||| | || ||||| || || | || |||||||| | ||||| | Sbjct 14634749 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTAC 14634690 Query 7654 GGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGT 7713 || |||||||| ||||| ||||| |||||||| ||||| || |||| ||| | |||||| Sbjct 14634689 AGATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGT 14634630 Query 7714 GAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTT 7773 |||||| || || | || ||||| || || | ||||||||| | ||||| |||||||| Sbjct 14634629 GAACCAAATCCCTGCTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 14634570 Query 7774 GAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTA 7833 || ||| ||||||||||| | || ||||| || || ||||| || || || || || Sbjct 14634569 AAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATA 14634510 Query 7834 GGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTC 7893 |||||||| |||||||| || | ||||| | || ||| || ||||||||||| Sbjct 14634509 AGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCGGATTCGTTTTCAGTGGTTTC 14634450 Query 7894 ACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAA 7953 | | || | ||||||||| | ||||||||||| |||||||| || ||||| || || Sbjct 14634449 CCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAA 14634390 Query 7954 GACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAA 8013 |||||||| || || | |||||| || || ||||| |||||||| || ||||| ||||| Sbjct 14634389 TACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGTTCTGCCTGGAA 14634330 Query 8014 GACAAGCAT 8022 |||| ||| Sbjct 14634329 TACAATCAT 14634321 >seq12 Length=27944835 Score = 221 bits (244), Expect = 2e-52 Identities = 238/315 (76%), Gaps = 0/315 (0%) Strand=Plus/Minus Query 7536 CAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGAC 7595 |||| ||||| |||| || ||||||||||| | |||||||| |||||||| |||||| Sbjct 3609972 CAGCTAGGTCTAGAGAAAAACTGTGAGCATTATGTTCGTGCATTACTTCCATACCAAGAT 3609913 Query 7596 CAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGATGG 7655 |||||| |||| | || |||||||| || | || |||||||| ||||| | | Sbjct 3609912 TAGCACGATTGATGATATCAGCCCAGGTATTAACAACGCGACCTTGGTTATCAACTACAG 3609853 Query 7656 ACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGA 7715 | ||||| || ||||| ||||| |||||||| | ||| || |||| ||| | |||||||| Sbjct 3609852 ATTGGTTTAAATTGAATCCGTTTAGGTTGAAAGTCATAGTACTAATACCTAAAGCAGTGA 3609793 Query 7716 ACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGA 7775 |||| || || | || ||||| || || | ||||||||| | ||||| |||||||| | Sbjct 3609792 ACCAAATCCCTGCTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAA 3609733 Query 7776 ACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGG 7835 | ||| ||||||||||| | || ||||| || || ||||| | | || || || | Sbjct 3609732 AACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGTCATAATATTATAAG 3609673 Query 7836 TCTCTTCTTCTTGAC 7850 ||||||| ||||||| Sbjct 3609672 TCTCTTCCTCTTGAC 3609658 >seq9 Length=26294017 Score = 147 bits (162), Expect = 3e-30 Identities = 149/194 (77%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 6638 TCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATAGCACAGAGCAATGCT 6697 ||||| || ||||| | ||| || || || || || || |||||||| || |||| || Sbjct 19895316 TCACCGTCCTCAAATAGAGTGTTTTCCACGGTTGCCCCATGAATAGCGCATAGCAGAGCC 19895375 Query 6698 CCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGCGTCCAGTTGTGGAAG 6757 | ||||| | || || || |||||||||||||| ||||| | |||||| || || || Sbjct 19895376 GCGCCTAATACTCCGGCAACTCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAAT 19895435 Query 6758 CCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAACGACGGCGCAAAGAAC 6817 || || | |||||| | ||| || ||||||||||| || ||||| ||||||||||||| Sbjct 19895436 CCTTGGAAGAAGAGGATGAATCGAAATATCGCTGCTACGCCAAAACTCGGCGCAAAGAAC 19895495 Query 6818 CAACTGGACTGTCC 6831 |||| ||| ||||| Sbjct 19895496 CAACCGGATTGTCC 19895509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622124706681280