Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq6 174 2e-38 >seq6 Length=34615992 Score = 174 bits (192), Expect = 2e-38 Identities = 319/457 (70%), Gaps = 18/457 (4%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| ||||| ||||||||||||||||| ||||| || | ||| ||| |||||| Sbjct 934169 GTAGTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 934110 Query 127291 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 127345 | || || ||||| | ||| | || || ||| || || | | |||| Sbjct 934109 CCAGTCGAACGGGTTGGCGACATTG---TACATCTTCTTG-CATCCGAG-CGCCATGAGC 934055 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG- 127404 || || || | |||| |||| ||||||| ||| ||| |||||| |||| ||| Sbjct 934054 AGCCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGCTCGCCGTTCATCCCGACGAGC 933995 Query 127405 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464 | || |||||||| || ||| |||| || |||| ||||| || || || ||||| Sbjct 933994 GCGACG-GGGAGCGCATCGCAGACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGAT 933936 Query 127465 GGCGTGAATAGTGTCCACCCCAGGTCTATTGCGTA--AAGTCTT-GAAGAGTTCCACAGC 127521 | | || | || | | | | ||| | | ||| | || ||| || ||| Sbjct 933935 GTCTTGGACGCGCGCCTCATCGAGCTTGCCGCGGAGGAGGTCGTAGAGGAGG--CA-AGC 933879 Query 127522 AAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 127581 || || ||||||||||||||| ||||||||||| || || |||||| || || || Sbjct 933878 GAAGTCGCAGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGG 933819 Query 127582 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 127641 |||||| ||||||||||| | |||||| || || || |||||||| |||||||||||||| Sbjct 933818 CATGAGTCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAATGAGCCCGAGAAGAAGATCCC 933759 Query 127642 CTCCACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 ||| || || ||||| || | || |||||||| ||| Sbjct 933758 CTCGACGCAGGCGAAGGCCACGAGGCGCTCGGCGAAG 933722 Score = 149 bits (164), Expect = 8e-31 Identities = 311/455 (68%), Gaps = 14/455 (3%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| ||||| ||||||||||||||||| ||||| || | ||| ||| |||||| Sbjct 8272698 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 8272757 Query 127291 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 127345 | || || ||||| | ||| | || || ||| || || | | ||||| Sbjct 8272758 CCAGTCGAAAGGGTTGGCGACGTTG---TACATCTTCTTG-CAGCCGAG-CGCCATGAGG 8272812 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG- 127404 || || || | |||| |||| ||||||| ||| || |||||| |||| ||| Sbjct 8272813 AGGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGC 8272872 Query 127405 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464 | || ||||||||||| ||| |||| || |||| ||||| || || || ||||| Sbjct 8272873 GCGACG-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGAT 8272931 Query 127465 GGCGTGAATAGTGTCCACCCCAGGTCTATTGCGTAA-AGTCTTGAAGAGTTCCACAGCAA 127523 || | | | | || | | | | ||| | ||| | | | || || | Sbjct 8272932 CTCGCGGACACGGGCCTCGTCGAGCTTGCCGCGGAGGAGT-TCGTATAGGAGGCAGGCGA 8272990 Query 127524 ACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 127583 | || ||| || |||||||| ||||||||||| || || |||||| || || |||| Sbjct 8272991 AGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCA 8273050 Query 127584 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 127643 |||| ||||||||||| | ||| || || || || || || || |||||||||||||||| Sbjct 8273051 TGAGGCCCCGCTTCTTGAGCCAAAAGATGGCGCAGAAGGAACCCGAGAAGAAGATCCCCT 8273110 Query 127644 CCACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 | || || ||||| || | || |||||||| ||| Sbjct 8273111 CGACGCAAGCGAAGGCGACGAGGCGCTCGGCGAAG 8273145 Score = 123 bits (136), Expect = 3e-23 Identities = 284/421 (67%), Gaps = 10/421 (2%) Strand=Plus/Plus Query 12690 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 12749 ||||||| || ||||| || | |||||||| || || || |||| || | ||| Sbjct 34192648 ACGGTGACCTGGCGATCGAACCTCCCTGGGCGAAGAAGCGCCGCGTCGAGCACATCGGGC 34192707 Query 12750 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCG---AAGCCATCCATCTCA 12806 | ||| ||||| |||| |||| || || | ||| || || ||||||||||| Sbjct 34192708 CTGTTTGTCGCGGCGAGCACAATGACACCGCT---GTTCCCGGCAAATCCATCCATCTCC 34192764 Query 12807 GTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCA-TTCGCGGGCATACCACCCGCACT 12865 |||||||| || |||||||| || || | |||||| ||| | | | | || || | Sbjct 34192765 GTCAAGAGCTGGTTGATGGTCTGCTCCCTCTCATCATTTCCCCCTCCGAGC-CCAGCGCC 34192823 Query 12866 GCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACG 12925 || ||| | |||||||| ||||| || |||||||| ||||| || || || | Sbjct 34192824 ACGCTGCCTCCCGACGGCATCAATCTCATCAATGAAGACGATGCAAGGGGCCTTGGCCTT 34192883 Query 12926 GGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985 ||| || || | |||| || || ||| |||||||| || |||| ||| || || Sbjct 34192884 GGCCTTCTCGAACAGGTCTCTGACCCTGGAGGCGCCGACACCGACGAACAGCTCGACGAA 34192943 Query 12986 ATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAG 13045 | || ||||| || || |||||| || || || ||||||| ||| || || || Sbjct 34192944 CTCGGAGGCGGCGCAGGAGAAGAAGGGCACTCCGGCCTCCCCCGCGACGGCACGCGCCAG 34193003 Query 13046 GAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGT-GGGATCCTGGCAC 13104 || ||||| || || || || || |||| | |||| | | | |||||| |||| | Sbjct 34193004 CAGTGTCTTGCCGGTTCCGGGCGGGCCGACGAGCA-GGCATCCCTTGGGGATCTTGGCCC 34193062 Query 13105 C 13105 | Sbjct 34193063 C 34193063 Score = 123 bits (136), Expect = 3e-23 Identities = 284/421 (67%), Gaps = 10/421 (2%) Strand=Plus/Plus Query 12690 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 12749 ||||||| || ||||| || | |||||||| || || || |||| || | ||| Sbjct 34198966 ACGGTGACCTGGCGATCGAACCTCCCTGGGCGAAGAAGCGCCGCGTCGAGCACATCGGGC 34199025 Query 12750 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCG---AAGCCATCCATCTCA 12806 | ||| ||||| |||| |||| || || | ||| || || ||||||||||| Sbjct 34199026 CTGTTTGTCGCGGCGAGCACAATGACACCGCT---GTTCCCGGCAAATCCATCCATCTCC 34199082 Query 12807 GTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCA-TTCGCGGGCATACCACCCGCACT 12865 |||||||| || |||||||| || || | |||||| ||| | | | | || || | Sbjct 34199083 GTCAAGAGCTGGTTGATGGTCTGCTCCCTCTCATCATTTCCCCCTCCGAGC-CCAGCGCC 34199141 Query 12866 GCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACG 12925 || ||| | |||||||| ||||| || |||||||| ||||| || || || | Sbjct 34199142 ACGCTGCCTCCCGACGGCATCAATCTCATCAATGAAGACGATGCAAGGGGCCTTGGCCTT 34199201 Query 12926 GGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985 ||| || || | |||| || || ||| |||||||| || |||| ||| || || Sbjct 34199202 GGCCTTCTCGAACAGGTCTCTGACCCTGGAGGCGCCGACACCGACGAACAGCTCGACGAA 34199261 Query 12986 ATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAG 13045 | || ||||| || || |||||| || || || ||||||| ||| || || || Sbjct 34199262 CTCGGAGGCGGCGCAGGAGAAGAAGGGCACTCCGGCCTCCCCCGCGACGGCACGCGCCAG 34199321 Query 13046 GAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGT-GGGATCCTGGCAC 13104 || ||||| || || || || || |||| | |||| | | | |||||| |||| | Sbjct 34199322 CAGTGTCTTGCCGGTTCCGGGCGGGCCGACGAGCA-GGCATCCCTTGGGGATCTTGGCCC 34199380 Query 13105 C 13105 | Sbjct 34199381 C 34199381 Score = 89.7 bits (98), Expect = 6e-13 Identities = 194/285 (68%), Gaps = 8/285 (3%) Strand=Plus/Plus Query 12705 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 12764 ||||| || || || | ||| | ||| || ||||||||| | ||| || || || Sbjct 31291560 TCAAAACGTCCAGGTCTGAGTAAAGCGGAATCCAGGATATCAGCCCTGTTGGTGGCAGCA 31291619 Query 12765 ATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 12824 || |||| ||| || || | || || |||||||||||||||| | ||||| | Sbjct 31291620 ATAACAATGATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAGTAACTGATTCAAA 31291679 Query 12825 GTTTGTTCACGTTCATCATT--CGCGGGC-ATACCACCCGCACTGCGTTGCTTACCGACG 12881 |||||||| | ||||||||| | | | ||||| | | || |||| | || || Sbjct 31291680 GTTTGTTCCCTTTCATCATTTCCACCACCAATACCTGTCCCCCT---TTGCCTTCCAACA 31291736 Query 12882 GCGTCAATTTCGTCAATGAAAACGATACACGGTTGATT-TTCACGGGCAACTTCAAAGAT 12940 || |||||||| |||| || || || || || ||| | | | | ||| ||| | Sbjct 31291737 GCATCAATTTCATCAACAAATACTATGCAAGGGGCATTCTCCTTTGCCTTCTTGAAA-AG 31291795 Query 12941 ATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985 ||| || || | |||||| || |||||||||||||||||||| Sbjct 31291796 ATCACGAACACGGGAGGCACCAACTCCCACAAACATCTCCACAAA 31291840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613507107973920