Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq6 206 4e-48 >seq6 Length=34615992 Score = 206 bits (228), Expect = 4e-48 Identities = 494/739 (67%), Gaps = 20/739 (3%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| || ||| || ||||| | |||| ||||| Sbjct 8272713 CTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATCCAGTCGAAAGGGTT 8272772 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 |||| || |||| | ||||| ||| || | | ||| || || || || Sbjct 8272773 GGCGACGTTGTACATCTTCTTGCAGCCGAGCGCCATGAGGAGGCGGTCGGCGACGAACTC 8272832 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | ||| | || | ||| || || | ||| ||||||||||| || | Sbjct 8272833 GATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGACGGGGAGCGCGTCGCA 8272892 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT-GCGAGACACGTTCGTACC 159887 | |||||| |||| || ||||| || |||| || |||| ||| |||||| | | Sbjct 8272893 GACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGATCTCGCG-GACACGGGCCTCGT 8272951 Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 | ||||||| | | | || | | |||||||| || |||||||||||||| |||| Sbjct 8272952 CGAGCTTGCCGCGGAGGAGTTCGT---ATAGGAGGCAGGCGAAGTCGCAGTGCAGGCCCT 8273008 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 |||| || ||||||| ||||||||| | | ||||||||||||||| || ||| |||| Sbjct 8273009 CGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCCCCGCTTCTTGA 8273068 Query 160008 GCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACGCC 160066 ||||||| |||| |||| ||| | | | | || ||||||||||| ||| || || || Sbjct 8273069 GCCAAAAGATGG-CGCAGAAGGAACCCGAGAAGAAGATCCCCTCGACGCAAGCGAAGGCG 8273127 Query 160067 ACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGC 160125 ||||| | ||| | || ||| | | | | | | |||| | ||||||||||||| Sbjct 8273128 ACGAGGCGCTCGGC----GAAGCGCTCGCCGCCGTCGATCCAGCGCATGGCCCATTCAGC 8273183 Query 160126 CTTCTTTGCGATGCACGGC----ATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCT 160181 | ||||| | ||||| | | |||| |||| || | | ||||| ||| Sbjct 8273184 C----TTGCGGCGGACGGCGGGGACGGTGTCGATGGCGCGGAAGAGGCGGTCCTTCTCGG 8273239 Query 160182 TCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGA 160241 | || ||| || | | |||| ||||||||| || | ||| | || |||| Sbjct 8273240 CGTCGTCGCGGATGTAGGTCTCGAGCAGCAGCGAGTACATCTCGGAGTGGATGTTCTCGA 8273299 Query 160242 TGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACC 160301 |||| ||||| || |||||| ||||| |||||| || |||||| Sbjct 8273300 TGGCGATCTGGAATCCGTAGAAGGCGCGTGCCTCGGCGACCTGCACGTCGGACATGAACC 8273359 Query 160302 TTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAG 160361 | | || || | || | ||||||| ||| || ||||| || | |||||| | Sbjct 8273360 TGGAGGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCAGCGAAGAAGGCGAGCACGTGGG 8273419 Query 160362 AGATGAAATGTCTCTCGTC 160380 ||||||| || | |||||| Sbjct 8273420 AGATGAAGTGGCGCTCGTC 8273438 Score = 199 bits (220), Expect = 6e-46 Identities = 361/520 (69%), Gaps = 16/520 (3%) Strand=Plus/Minus Query 159628 CTTCTTGTATTGCGAC-ACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTG 159686 ||||| ||| | || | ||| ||||||||| |||||||||||||||| || ||| || Sbjct 934175 CTTCTGGTAGT-CGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGA 934117 Query 159687 ATTCCATGAACCCGAATGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCA 159746 ||||| | |||| ||||| || | || |||| ||||||| ||| | Sbjct 934116 GCTCCATCCAGTCGAACGGGTTGGCGACATTGTACATCTTCTTGCATCCGAGCGCCATGA 934057 Query 159747 GCAACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCA 159806 ||| || ||| || || || |||||||| | ||| |||| | ||| ||||| | | Sbjct 934056 GCAGCCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGCTCGCCGTTCATCCCGACGA 933997 Query 159807 GCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAA 159866 || ||||||||||| || | | |||||| |||| || ||||| || |||| || | Sbjct 933996 GCGCGACGGGGAGCGCATCGCAGACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGA 933937 Query 159867 TCTGCGAGACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACG 159926 | | ||| || | | | ||||||| | | |||| | | |||||||| | Sbjct 933936 TGTCTTGGACGCGCGCCTCATCGAGCTTGCCGCGGAGGAGGTCGT---AGAGGAGGCAAG 933880 Query 159927 CAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCG 159986 | ||||||||||| || |||||||| || ||||||| ||||||||| | | ||||||||| Sbjct 933879 CGAAGTCGCAGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCG 933820 Query 159987 GCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATC 160045 |||||| || ||| |||||||| || |||| |||| || | | | | || |||||| Sbjct 933819 GCATGAGTCCCCGCTTCTTGAGCCAGAAGATGG-CGCAGAATGAGCCCGAGAAGAAGATC 933761 Query 160046 CCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGT 160104 ||||| ||| || || |||||||| | ||| | || ||| | | | | | | | Sbjct 933760 CCCTCGACGCAGGCGAAGGCCACGAGGCGCTCGGC----GAAGCGCTCGCCGCCGTCGAT 933705 Query 160105 CCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGC 160144 ||||| ||||||| |||||| ||||| ||||||| Sbjct 933704 CCACCGCATGGCCCAGTCAGCC----TTGCGGCGCACGGC 933669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795155080726720